Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56119054..56121303-chr1:56122275..56124913,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17101352	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap]
rs17112508	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs17112514	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs17112562	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs17112565	1.00[ASN][1000 genomes]
rs17112578	1.00[ASN][1000 genomes]
rs17112594	1.00[YRI][hapmap]
rs17112596	0.94[EUR][1000 genomes]
rs17112601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs17112640	1.00[CEU][hapmap];0.94[GIH][hapmap];0.93[MKK][hapmap]
rs17112655	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap]
rs17112669	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap]
rs17112694	0.89[AFR][1000 genomes]
rs17112697	0.89[AFR][1000 genomes]
rs17112709	0.89[AFR][1000 genomes]
rs17112720	0.89[AFR][1000 genomes]
rs6588570	1.00[CEU][hapmap]
rs72669744	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669746	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669747	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671428	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461617	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv546303	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1014866	chr1:56059054-56129092	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv526148	chr1:56101597-56146450	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56117800-56122800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:56118600-56123200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:56118800-56123800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:56119200-56123600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:56121200-56123800	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:56121800-56123600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:56122400-56122600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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