Variant report

Variant	rs17112655
Chromosome Location	chr1:56168803-56168804
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs17101352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112601	1.00[CEU][hapmap];0.94[GIH][hapmap]
rs17112607	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap]
rs17112640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17112669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112720	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3862235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6588570	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6668994	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669760	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669761	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72669762	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669764	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669768	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669776	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669778	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669779	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669780	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669781	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669782	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669783	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669788	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669791	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669793	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669796	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56158400-56170800	Enhancers	NHDF-Ad	bronchial
2	chr1:56161400-56169400	Weak transcription	Placenta	Placenta
3	chr1:56162400-56169400	Weak transcription	Ovary	ovary
4	chr1:56164800-56169000	Weak transcription	Fetal Lung	lung
5	chr1:56166400-56169600	Weak transcription	HSMMtube	muscle
6	chr1:56166400-56182200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:56166800-56169200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:56166800-56169200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:56166800-56169600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr1:56167000-56169200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr1:56167400-56169200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:56167600-56169200	Weak transcription	Fetal Stomach	stomach
13	chr1:56167600-56174000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:56167800-56169000	Weak transcription	NHLF	lung
15	chr1:56167800-56169200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:56167800-56179000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:56167800-56181000	Weak transcription	HSMM	muscle
18	chr1:56168000-56180600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr1:56168800-56169400	Enhancers	Colon Smooth Muscle	Colon

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