Variant report

Variant	rs6668994
Chromosome Location	chr1:56136416-56136417
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs17101352	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17112640	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17112655	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17112662	0.94[EUR][1000 genomes]
rs17112669	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17112694	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17112697	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17112709	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17112720	0.88[EUR][1000 genomes]
rs3862235	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6588570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669760	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669761	1.00[EUR][1000 genomes]
rs72669762	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669764	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669768	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669776	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669778	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669779	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669781	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669782	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669783	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669788	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669791	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669796	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669797	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669798	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72671411	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72671413	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72671420	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72671428	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526148	chr1:56101597-56146450	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56134400-56136800	Enhancers	Fetal Stomach	stomach
2	chr1:56134600-56136600	Enhancers	Colon Smooth Muscle	Colon
3	chr1:56134600-56136800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:56134600-56137000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:56134600-56137000	Enhancers	Ovary	ovary
6	chr1:56134600-56137600	Enhancers	Fetal Lung	lung
7	chr1:56134600-56137600	Enhancers	NHDF-Ad	bronchial
8	chr1:56135000-56136600	Enhancers	Fetal Muscle Leg	muscle
9	chr1:56135200-56136800	Enhancers	HSMM	muscle
10	chr1:56135200-56136800	Enhancers	NHLF	lung
11	chr1:56135400-56136800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:56135600-56136800	Enhancers	Brain Angular Gyrus	brain
13	chr1:56135600-56136800	Enhancers	Psoas Muscle	Psoas
14	chr1:56135600-56139000	Weak transcription	Fetal Heart	heart
15	chr1:56135800-56138600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:56135800-56139000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr1:56135800-56162000	Weak transcription	Aorta	Aorta
18	chr1:56136000-56136800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:56136000-56136800	Enhancers	Brain Cingulate Gyrus	brain
20	chr1:56136200-56136600	Active TSS	Brain Substantia Nigra	brain
21	chr1:56136200-56136800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:56136200-56136800	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr1:56136200-56136800	Active TSS	HSMMtube	muscle
24	chr1:56136200-56136800	Flanking Active TSS	Osteobl	bone
25	chr1:56136400-56136800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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