Variant report

Variant	rs3862235
Chromosome Location	chr1:56182031-56182032
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56176000..56178931-chr1:56179257..56182053,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs17101352	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17112669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112720	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6588570	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6668994	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669760	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669761	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72669762	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669764	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669768	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669776	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669778	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669779	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669780	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669781	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669782	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669783	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669788	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669791	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669793	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669796	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56166400-56182200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:56174000-56186000	Weak transcription	Spleen	Spleen
3	chr1:56174200-56183000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr1:56177800-56187800	Enhancers	Placenta	Placenta
5	chr1:56178800-56183400	Weak transcription	Fetal Kidney	kidney
6	chr1:56179400-56183800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:56179800-56186800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:56180000-56182800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:56180000-56186400	Enhancers	NHLF	lung
10	chr1:56180000-56190600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr1:56180400-56186600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:56180400-56186600	Enhancers	Osteobl	bone
13	chr1:56180600-56185000	Enhancers	NHDF-Ad	bronchial
14	chr1:56180600-56187200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr1:56181000-56182800	Enhancers	Ovary	ovary
16	chr1:56181000-56184000	Weak transcription	Liver	Liver
17	chr1:56181000-56184200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr1:56181000-56187000	Enhancers	HSMM	muscle
19	chr1:56181400-56186600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:56181600-56182600	Enhancers	Fetal Heart	heart
21	chr1:56181600-56186600	Enhancers	Placenta Amnion	Placenta Amnion
22	chr1:56181600-56186800	Enhancers	Fetal Stomach	stomach
23	chr1:56181600-56187200	Enhancers	Fetal Muscle Leg	muscle
24	chr1:56181800-56182200	Enhancers	Psoas Muscle	Psoas
25	chr1:56181800-56182400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr1:56181800-56186200	Enhancers	Colon Smooth Muscle	Colon
27	chr1:56181800-56186400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr1:56181800-56186400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr1:56181800-56186400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr1:56181800-56186400	Enhancers	Fetal Lung	lung
31	chr1:56181800-56186400	Enhancers	NH-A	brain
32	chr1:56181800-56186600	Enhancers	HSMMtube	muscle
33	chr1:56182000-56183800	Weak transcription	Right Atrium	heart
34	chr1:56182000-56186400	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr1:56182000-56186400	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links