Variant report

Variant	rs17112640
Chromosome Location	chr1:56161325-56161326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs17101352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[MKK][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112601	1.00[CEU][hapmap];0.94[GIH][hapmap]
rs17112607	1.00[CEU][hapmap];0.94[GIH][hapmap];0.93[MKK][hapmap]
rs17112655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17112669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112720	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3862235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6588570	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6668994	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669760	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669761	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72669762	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669764	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669768	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669776	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669778	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669779	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669780	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669781	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669782	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669783	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669788	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669791	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669793	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669796	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669797	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669798	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56135800-56162000	Weak transcription	Aorta	Aorta
2	chr1:56158400-56170800	Enhancers	NHDF-Ad	bronchial
3	chr1:56159000-56162800	Enhancers	Fetal Muscle Leg	muscle
4	chr1:56159200-56162200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:56159200-56163800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:56159400-56163400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr1:56159600-56161400	Enhancers	Placenta	Placenta
8	chr1:56159600-56162800	Enhancers	Psoas Muscle	Psoas
9	chr1:56159600-56163000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:56159600-56163000	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr1:56159600-56164000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:56159600-56164000	Enhancers	NHLF	lung
13	chr1:56159600-56166800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:56159800-56162800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:56159800-56163000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:56159800-56163400	Enhancers	Osteobl	bone
17	chr1:56159800-56164800	Enhancers	Fetal Lung	lung
18	chr1:56160000-56161400	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr1:56160000-56161400	Enhancers	Right Ventricle	heart
20	chr1:56160000-56162000	Enhancers	Colon Smooth Muscle	Colon
21	chr1:56160000-56163000	Enhancers	Muscle Satellite Cultured Cells	--
22	chr1:56160000-56163000	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr1:56160000-56163000	Enhancers	NH-A	brain
24	chr1:56160200-56162200	Enhancers	NHEK	skin
25	chr1:56160200-56162800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr1:56160400-56161600	Enhancers	Adipose Nuclei	Adipose
27	chr1:56160400-56162000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr1:56160400-56162400	Enhancers	HSMM	muscle
29	chr1:56160400-56162800	Enhancers	Fetal Stomach	stomach
30	chr1:56160600-56161400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr1:56160600-56161400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr1:56160600-56161400	Weak transcription	Right Atrium	heart
33	chr1:56160600-56164000	Enhancers	Fetal Heart	heart
34	chr1:56160800-56161800	Weak transcription	HSMMtube	muscle
35	chr1:56161000-56162600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr1:56161200-56161400	Enhancers	Rectal Smooth Muscle	rectum
37	chr1:56161200-56161600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr1:56161200-56162000	Weak transcription	Ovary	ovary
39	chr1:56161200-56162200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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