Variant report

Variant	rs72671413
Chromosome Location	chr1:56163356-56163357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56162766..56164524-chr1:57043600..57045392,2	MCF-7	breast:
2	chr1:56156698..56158897-chr1:56161662..56164222,3	K562	blood:

Variant related genes	Relation type
ENSG00000162407	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs17101352	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17112669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112720	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3862235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6588570	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6668994	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669760	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669761	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72669762	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669764	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669768	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669776	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669778	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669779	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669780	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669781	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669782	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669783	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72669788	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669791	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669793	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669796	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669797	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669798	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56158400-56170800	Enhancers	NHDF-Ad	bronchial
2	chr1:56159200-56163800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:56159400-56163400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr1:56159600-56164000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:56159600-56164000	Enhancers	NHLF	lung
6	chr1:56159600-56166800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:56159800-56163400	Enhancers	Osteobl	bone
8	chr1:56159800-56164800	Enhancers	Fetal Lung	lung
9	chr1:56160600-56164000	Enhancers	Fetal Heart	heart
10	chr1:56161400-56165800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr1:56161400-56169400	Weak transcription	Placenta	Placenta
12	chr1:56161600-56165800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:56162000-56165000	Weak transcription	Colon Smooth Muscle	Colon
14	chr1:56162200-56164000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:56162400-56166000	Weak transcription	HSMM	muscle
16	chr1:56162400-56169400	Weak transcription	Ovary	ovary
17	chr1:56162600-56166200	Weak transcription	HSMMtube	muscle
18	chr1:56162800-56165800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:56162800-56165800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:56163000-56164600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:56163000-56164800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr1:56163000-56165800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:56163000-56166000	Weak transcription	NH-A	brain
24	chr1:56163200-56163400	Enhancers	Fetal Stomach	stomach

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