Variant report

Variant	rs17127719
Chromosome Location	chr10:112426777-112426778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1124236	1.00[EUR][1000 genomes]
rs11812150	1.00[TSI][hapmap]
rs12098489	1.00[EUR][1000 genomes]
rs1547785	1.00[EUR][1000 genomes]
rs17127727	1.00[EUR][1000 genomes]
rs17127730	1.00[EUR][1000 genomes]
rs1890923	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4917586	1.00[EUR][1000 genomes]
rs57223126	1.00[EUR][1000 genomes]
rs6585005	1.00[EUR][1000 genomes]
rs7075052	1.00[EUR][1000 genomes]
rs7094685	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7100718	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447705	chr10:112231005-112441828	Strong transcription Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112410000-112426800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:112411600-112428200	Weak transcription	Aorta	Aorta
3	chr10:112415600-112427600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:112418600-112427000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:112423800-112427000	Enhancers	Fetal Heart	heart
6	chr10:112424400-112426800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:112424600-112426800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr10:112424600-112427000	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr10:112425200-112427200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:112425200-112427400	Weak transcription	HSMM	muscle
11	chr10:112425400-112426800	Weak transcription	HSMMtube	muscle
12	chr10:112425400-112427400	Weak transcription	NH-A	brain
13	chr10:112425400-112431600	Weak transcription	A549	lung
14	chr10:112425800-112426800	Weak transcription	K562	blood
15	chr10:112425800-112431800	Weak transcription	HMEC	breast
16	chr10:112426000-112428400	Enhancers	Colon Smooth Muscle	Colon
17	chr10:112426000-112428400	Enhancers	Left Ventricle	heart
18	chr10:112426400-112426800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr10:112426400-112427200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
20	chr10:112426600-112427200	Enhancers	Right Ventricle	heart
21	chr10:112426600-112427400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
22	chr10:112426600-112427400	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr10:112426600-112427400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
24	chr10:112426600-112427600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr10:112426600-112427600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
26	chr10:112426600-112427600	Enhancers	H9 Cell Line	embryonic stem cell
27	chr10:112426600-112427600	Enhancers	Right Atrium	heart
28	chr10:112426600-112428200	Enhancers	Psoas Muscle	Psoas
29	chr10:112426600-112428400	Enhancers	Rectal Smooth Muscle	rectum

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