Variant report

Variant	rs6585005
Chromosome Location	chr10:112411472-112411473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:112410120..112413208-chr10:112417857..112422118,3	K562	blood:
2	chr10:112404074..112408778-chr10:112410164..112414343,7	K562	blood:
3	chr10:112410966..112413464-chr10:112415119..112417758,2	K562	blood:
4	chr10:112324226..112328138-chr10:112406592..112411628,5	K562	blood:

Variant related genes	Relation type
ENSG00000203867	Chromatin interaction
ENSG00000108055	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1124236	1.00[EUR][1000 genomes]
rs12098489	1.00[EUR][1000 genomes]
rs1547785	1.00[EUR][1000 genomes]
rs17127719	1.00[EUR][1000 genomes]
rs17127727	1.00[EUR][1000 genomes]
rs17127730	1.00[EUR][1000 genomes]
rs1890923	1.00[EUR][1000 genomes]
rs4917586	1.00[EUR][1000 genomes]
rs57223126	1.00[EUR][1000 genomes]
rs7075052	1.00[EUR][1000 genomes]
rs7100718	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447705	chr10:112231005-112441828	Strong transcription Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv526452	chr10:112263030-112418778	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv430264	chr10:112277340-112415418	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv508607	chr10:112331531-112415100	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112405400-112411600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr10:112408000-112411800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:112408400-112411800	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:112409200-112411600	Enhancers	Primary B cells from cord blood	blood
5	chr10:112409200-112411800	Enhancers	Primary hematopoietic stem cells	blood
6	chr10:112409200-112411800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:112409200-112412000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr10:112409400-112412200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:112409600-112413000	Enhancers	GM12878-XiMat	blood
10	chr10:112410000-112412600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:112410000-112412600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:112410000-112426800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:112410200-112418000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr10:112410400-112417600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr10:112410600-112418000	Weak transcription	Psoas Muscle	Psoas
16	chr10:112410800-112411800	Enhancers	Rectal Smooth Muscle	rectum
17	chr10:112410800-112412000	Enhancers	NHDF-Ad	bronchial
18	chr10:112410800-112412800	Enhancers	Primary T cells from cord blood	blood
19	chr10:112410800-112424600	Weak transcription	HSMMtube	muscle
20	chr10:112411000-112411600	Bivalent Enhancer	Fetal Lung	lung
21	chr10:112411000-112411600	Flanking Active TSS	K562	blood
22	chr10:112411000-112412000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:112411200-112411600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:112411200-112411600	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
25	chr10:112411200-112411600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr10:112411200-112411600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr10:112411200-112411600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
28	chr10:112411200-112411600	Bivalent/Poised TSS	NHLF	lung
29	chr10:112411200-112411800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr10:112411200-112415600	Enhancers	Fetal Heart	heart
31	chr10:112411400-112411600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
32	chr10:112411400-112411600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:112411400-112411600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:112411400-112411600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:112411400-112411600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:112411400-112411600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr10:112411400-112411600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:112411400-112411600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:112411400-112411600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
40	chr10:112411400-112411600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr10:112411400-112411600	Enhancers	Aorta	Aorta
42	chr10:112411400-112411600	Enhancers	Left Ventricle	heart
43	chr10:112411400-112411600	Genic enhancers	Right Atrium	heart
44	chr10:112411400-112411600	Enhancers	Right Ventricle	heart
45	chr10:112411400-112411600	Flanking Active TSS	NH-A	brain
46	chr10:112411400-112411800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr10:112411400-112411800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
48	chr10:112411400-112411800	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr10:112411400-112411800	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr10:112411400-112412000	Enhancers	Muscle Satellite Cultured Cells	--

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