Variant report

Variant	rs17127730
Chromosome Location	chr10:112433551-112433552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000214413	Chromatin interaction
ENSG00000108061	Chromatin interaction
ENSG00000223302	Chromatin interaction
ENSG00000203867	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1124236	1.00[EUR][1000 genomes]
rs12098489	1.00[EUR][1000 genomes]
rs1547785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17127719	1.00[EUR][1000 genomes]
rs17127727	1.00[EUR][1000 genomes]
rs1890923	1.00[EUR][1000 genomes]
rs4917586	1.00[EUR][1000 genomes]
rs57223126	1.00[EUR][1000 genomes]
rs6585005	1.00[EUR][1000 genomes]
rs7075052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7100718	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447705	chr10:112231005-112441828	Strong transcription Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112432600-112434000	Weak transcription	Right Atrium	heart
2	chr10:112432600-112434200	Weak transcription	Psoas Muscle	Psoas
3	chr10:112432600-112435200	Weak transcription	Left Ventricle	heart
4	chr10:112432600-112435400	Weak transcription	Right Ventricle	heart
5	chr10:112432600-112439200	Weak transcription	HSMM	muscle
6	chr10:112432600-112439400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr10:112432600-112439400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:112432600-112442000	Weak transcription	Aorta	Aorta
9	chr10:112433200-112434600	Enhancers	HSMMtube	muscle
10	chr10:112433200-112434800	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr10:112433400-112433800	Enhancers	K562	blood
12	chr10:112433400-112434000	Flanking Active TSS	Fetal Heart	heart
13	chr10:112433400-112434400	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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