Variant report

Variant	rs17127727
Chromosome Location	chr10:112432037-112432038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:112369733..112370607-chr10:112431509..112432461,4	MCF-7	breast:
2	chr10:112402345..112407896-chr10:112430774..112433743,5	K562	blood:
3	chr10:112392943..112394914-chr10:112430442..112432100,2	K562	blood:
4	chr10:112369074..112370718-chr10:112431304..112432478,11	MCF-7	breast:
5	chr10:112431631..112432455-chr11:62606875..62607488,2	NB4	blood:
6	chr10:112403546..112405609-chr10:112430735..112433398,2	K562	blood:
7	chr10:112431392..112434140-chr10:112677176..112679795,2	K562	blood:
8	chr10:112431945..112433615-chr10:112434764..112437473,2	MCF-7	breast:
9	chr10:112431761..112432300-chr10:113120147..113120703,2	MCF-7	breast:
10	chr10:112429152..112434281-chr10:112436214..112442566,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000214413	Chromatin interaction
ENSG00000203867	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000108061	Chromatin interaction
ENSG00000223302	Chromatin interaction
ENSG00000263919	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1124236	1.00[EUR][1000 genomes]
rs12098489	1.00[EUR][1000 genomes]
rs1547785	1.00[EUR][1000 genomes]
rs17127719	1.00[EUR][1000 genomes]
rs17127730	1.00[EUR][1000 genomes]
rs1890923	1.00[EUR][1000 genomes]
rs4917586	1.00[EUR][1000 genomes]
rs57223126	1.00[EUR][1000 genomes]
rs6585005	1.00[EUR][1000 genomes]
rs7075052	1.00[EUR][1000 genomes]
rs7100718	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447705	chr10:112231005-112441828	Strong transcription Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112431600-112432200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr10:112431600-112432200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
3	chr10:112431600-112432200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
4	chr10:112431600-112432400	Active TSS	Brain Anterior Caudate	brain
5	chr10:112431600-112432600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr10:112431600-112432600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
7	chr10:112431600-112432600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr10:112431600-112432600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:112431600-112432600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
10	chr10:112431600-112432600	Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr10:112431600-112432600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:112431600-112432600	Active TSS	Muscle Satellite Cultured Cells	--
13	chr10:112431600-112432600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:112431600-112432600	Active TSS	Brain Cingulate Gyrus	brain
15	chr10:112431600-112432600	Active TSS	Brain Hippocampus Middle	brain
16	chr10:112431600-112432600	Active TSS	Colon Smooth Muscle	Colon
17	chr10:112431600-112432600	Active TSS	Duodenum Smooth Muscle	Duodenum
18	chr10:112431600-112432600	Active TSS	Right Ventricle	heart
19	chr10:112431600-112432600	Active TSS	Stomach Smooth Muscle	stomach
20	chr10:112431600-112432600	Active TSS	A549	lung
21	chr10:112431600-112432800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:112431600-112432800	Active TSS	Primary T killer memory cells from peripheral blood	blood
23	chr10:112431600-112432800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:112431800-112432200	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:112431800-112432200	Active TSS	Breast Myoepithelial Primary Cells	Breast
26	chr10:112431800-112432200	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
27	chr10:112431800-112432200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr10:112431800-112432200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr10:112431800-112432200	Bivalent/Poised TSS	Colonic Mucosa	Colon
30	chr10:112431800-112432200	Active TSS	Esophagus	oesophagus
31	chr10:112431800-112432200	Bivalent Enhancer	Fetal Brain Male	brain
32	chr10:112431800-112432200	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
33	chr10:112431800-112432200	Flanking Active TSS	HSMM	muscle
34	chr10:112431800-112432400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
35	chr10:112431800-112432400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
36	chr10:112431800-112432400	Active TSS	Hela-S3	cervix
37	chr10:112431800-112432400	Bivalent/Poised TSS	HepG2	liver
38	chr10:112431800-112432600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
39	chr10:112431800-112432600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr10:112431800-112432600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr10:112431800-112432600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
42	chr10:112431800-112432600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
43	chr10:112431800-112432600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
44	chr10:112431800-112432600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr10:112431800-112432600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
46	chr10:112431800-112432600	Flanking Active TSS	Primary hematopoietic stem cells	blood
47	chr10:112431800-112432600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:112431800-112432600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr10:112431800-112432600	Active TSS	Aorta	Aorta
50	chr10:112431800-112432600	Active TSS	Brain Angular Gyrus	brain

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