Variant report

Variant	rs17140299
Chromosome Location	chr7:117301071-117301072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16870129	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140308	0.87[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34260394	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34372925	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs34476343	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34623881	1.00[AMR][1000 genomes]
rs35050594	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35097594	1.00[AMR][1000 genomes]
rs35347718	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35380228	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35466314	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35511767	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35547457	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35924144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36024281	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6948175	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6954703	1.00[MEX][hapmap]
rs6969578	1.00[AMR][1000 genomes]
rs7783208	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117286000-117310200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:117292000-117301200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:117294800-117309800	Weak transcription	Pancreas	Pancrea
4	chr7:117295400-117304400	Weak transcription	Hela-S3	cervix
5	chr7:117296600-117306400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr7:117298400-117301800	Enhancers	Dnd41	blood
7	chr7:117298800-117301600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr7:117299400-117301600	Weak transcription	Small Intestine	intestine
9	chr7:117299800-117301200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr7:117300000-117304400	Weak transcription	A549	lung
11	chr7:117300400-117301600	Weak transcription	Fetal Intestine Large	intestine
12	chr7:117300400-117305800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:117300600-117304600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:117300800-117302000	Enhancers	Fetal Intestine Small	intestine
15	chr7:117301000-117304400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:117301000-117304600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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