Variant report

Variant	rs35347718
Chromosome Location	chr7:117254323-117254324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16870129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140299	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140308	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34260394	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34372925	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs34476343	1.00[AMR][1000 genomes]
rs34623881	1.00[AMR][1000 genomes]
rs35050594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35097594	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35380228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35466314	1.00[AMR][1000 genomes]
rs35511767	1.00[AMR][1000 genomes]
rs35547457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35924144	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36024281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6948175	1.00[AMR][1000 genomes]
rs6969578	1.00[AMR][1000 genomes]
rs7783208	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889083	chr7:117203417-117256374	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117245200-117294000	Weak transcription	Pancreas	Pancrea
2	chr7:117245800-117256600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:117246400-117255600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:117253000-117267200	Weak transcription	Dnd41	blood
5	chr7:117253200-117254600	Weak transcription	Fetal Intestine Large	intestine
6	chr7:117253200-117256400	Weak transcription	Fetal Intestine Small	intestine
7	chr7:117253200-117256600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr7:117253600-117256400	Weak transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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