Variant report

Variant	rs7783208
Chromosome Location	chr7:117245865-117245866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16870129	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140299	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140308	1.00[AMR][1000 genomes]
rs34260394	1.00[AMR][1000 genomes]
rs34372925	0.85[AMR][1000 genomes]
rs34476343	1.00[AMR][1000 genomes]
rs34623881	1.00[AMR][1000 genomes]
rs35050594	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35097594	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35347718	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35380228	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35466314	1.00[AMR][1000 genomes]
rs35511767	1.00[AMR][1000 genomes]
rs35547457	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35924144	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36024281	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6948175	1.00[AMR][1000 genomes]
rs6969578	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889078	chr7:117135025-117246315	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv889082	chr7:117203417-117246315	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv889083	chr7:117203417-117256374	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv889084	chr7:117212723-117246315	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv889085	chr7:117214089-117246315	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv889086	chr7:117214089-117252873	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv889087	chr7:117226766-117246315	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117244000-117247200	Weak transcription	Gastric	stomach
2	chr7:117244200-117252600	Weak transcription	Dnd41	blood
3	chr7:117244200-117253200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:117244800-117246400	Enhancers	Fetal Intestine Large	intestine
5	chr7:117244800-117246400	Genic enhancers	Fetal Intestine Small	intestine
6	chr7:117244800-117246600	Enhancers	A549	lung
7	chr7:117245000-117246400	Enhancers	Liver	Liver
8	chr7:117245000-117246400	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr7:117245000-117246600	Enhancers	Duodenum Mucosa	Duodenum
10	chr7:117245000-117252800	Weak transcription	Small Intestine	intestine
11	chr7:117245200-117294000	Weak transcription	Pancreas	Pancrea
12	chr7:117245800-117246200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr7:117245800-117256600	Weak transcription	Rectal Mucosa Donor 29	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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