Variant report

Variant	rs34372925
Chromosome Location	chr7:117313481-117313482
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:117257272..117259077-chr7:117312247..117314442,2	MCF-7	breast:
2	chr7:117308138..117311629-chr7:117312851..117315783,3	MCF-7	breast:
3	chr7:117305228..117309345-chr7:117311751..117315274,4	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16870129	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17140299	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17140308	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs34260394	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs34476343	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs34623881	0.85[AMR][1000 genomes]
rs35050594	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35097594	0.85[AMR][1000 genomes]
rs35347718	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35380228	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35466314	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35511767	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35547457	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35924144	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs36024281	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6948175	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6969578	0.85[AMR][1000 genomes]
rs7783208	0.85[AMR][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117306200-117315600	Weak transcription	Fetal Lung	lung
2	chr7:117310600-117314600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:117310800-117313600	Weak transcription	Adipose Nuclei	Adipose
4	chr7:117312400-117317200	Enhancers	Fetal Intestine Large	intestine
5	chr7:117312600-117314000	Enhancers	Hela-S3	cervix
6	chr7:117312800-117314000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
7	chr7:117312800-117314800	Enhancers	Liver	Liver
8	chr7:117312800-117317400	Enhancers	Fetal Intestine Small	intestine
9	chr7:117313000-117314000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr7:117313000-117314000	Enhancers	Duodenum Mucosa	Duodenum
11	chr7:117313000-117316400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:117313200-117313600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:117313200-117313600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:117313200-117313600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:117313200-117313600	Enhancers	Brain Angular Gyrus	brain
16	chr7:117313200-117313600	Active TSS	Brain Anterior Caudate	brain
17	chr7:117313200-117313800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr7:117313200-117314000	Flanking Active TSS	Brain Cingulate Gyrus	brain
19	chr7:117313200-117314200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr7:117313200-117314200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:117313200-117314200	Flanking Active TSS	Brain Hippocampus Middle	brain
22	chr7:117313200-117314400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr7:117313200-117314400	Enhancers	Fetal Heart	heart
24	chr7:117313200-117314600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr7:117313200-117315400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr7:117313200-117316600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:117313200-117317000	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr7:117313400-117313600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
29	chr7:117313400-117313600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:117313400-117313600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr7:117313400-117313600	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr7:117313400-117313600	Enhancers	NHEK	skin
33	chr7:117313400-117313600	Enhancers	NHLF	lung
34	chr7:117313400-117313800	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr7:117313400-117313800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr7:117313400-117313800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr7:117313400-117313800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr7:117313400-117313800	Flanking Active TSS	Colonic Mucosa	Colon
39	chr7:117313400-117313800	Enhancers	Fetal Kidney	kidney
40	chr7:117313400-117313800	Enhancers	Placenta	Placenta
41	chr7:117313400-117313800	Enhancers	Gastric	stomach
42	chr7:117313400-117313800	Enhancers	Left Ventricle	heart
43	chr7:117313400-117313800	Enhancers	Pancreas	Pancrea
44	chr7:117313400-117313800	Active TSS	Rectal Mucosa Donor 29	rectum
45	chr7:117313400-117313800	ZNF genes & repeats	Right Atrium	heart
46	chr7:117313400-117314000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
47	chr7:117313400-117314000	Active TSS	H9 Cell Line	embryonic stem cell
48	chr7:117313400-117314000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
49	chr7:117313400-117314000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr7:117313400-117314000	Active TSS	Brain Inferior Temporal Lobe	brain

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