Variant report

Variant	rs34260394
Chromosome Location	chr7:117306150-117306151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:117301157..117302902-chr7:117304073..117306699,2	K562	blood:
2	chr7:117255020..117257143-chr7:117304303..117306209,2	MCF-7	breast:
3	chr7:117300308..117302591-chr7:117304728..117307029,2	MCF-7	breast:
4	7:115847372-115857098..7:117305160-117306431	GM12878	blood:
5	chr7:117303758..117306592-chr7:117317901..117319911,2	K562	blood:
6	chr7:117305228..117309345-chr7:117311751..117315274,4	MCF-7	breast:
7	chr7:117304804..117307634-chr7:117310196..117313135,3	MCF-7	breast:
8	7:117100350-117112126..7:117305160-117306431	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000001626	Chromatin interaction
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16870129	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140299	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34372925	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs34476343	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34623881	1.00[AMR][1000 genomes]
rs35050594	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35097594	1.00[AMR][1000 genomes]
rs35347718	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35380228	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35466314	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35511767	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35547457	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35924144	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36024281	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6948175	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6969578	1.00[AMR][1000 genomes]
rs7783208	1.00[AMR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117286000-117310200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:117294800-117309800	Weak transcription	Pancreas	Pancrea
3	chr7:117296600-117306400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:117301800-117311800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr7:117302000-117306600	Weak transcription	Fetal Intestine Small	intestine
6	chr7:117302400-117311400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:117304200-117308200	Strong transcription	Duodenum Mucosa	Duodenum
8	chr7:117304400-117307800	Enhancers	Hela-S3	cervix
9	chr7:117304400-117308000	Enhancers	Dnd41	blood
10	chr7:117304400-117308200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:117304600-117308000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:117305000-117306200	Enhancers	A549	lung
13	chr7:117305000-117306400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:117305000-117307200	Enhancers	HUVEC	blood vessel
15	chr7:117305000-117307600	Weak transcription	Esophagus	oesophagus
16	chr7:117305000-117307600	Enhancers	NHLF	lung
17	chr7:117305800-117306200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:117305800-117306600	Enhancers	Placenta Amnion	Placenta Amnion
19	chr7:117305800-117307200	Enhancers	Placenta	Placenta
20	chr7:117305800-117308000	Enhancers	NH-A	brain
21	chr7:117306000-117306200	Enhancers	Fetal Lung	lung
22	chr7:117306000-117306600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr7:117306000-117306600	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr7:117306000-117307000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr7:117306000-117307200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr7:117306000-117308200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr7:117306000-117308200	Strong transcription	Fetal Intestine Large	intestine

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