Variant report

Variant	rs17141270
Chromosome Location	chr5:116544594-116544595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1494822	1.00[EUR][1000 genomes]
rs17141468	1.00[EUR][1000 genomes]
rs56051865	1.00[EUR][1000 genomes]
rs56303308	1.00[EUR][1000 genomes]
rs56323145	1.00[EUR][1000 genomes]
rs56357276	1.00[EUR][1000 genomes]
rs57997641	1.00[EUR][1000 genomes]
rs60290895	1.00[EUR][1000 genomes]
rs60726905	1.00[EUR][1000 genomes]
rs61213955	1.00[EUR][1000 genomes]
rs61215989	1.00[EUR][1000 genomes]
rs73266768	1.00[EUR][1000 genomes]
rs73266798	1.00[EUR][1000 genomes]
rs73783719	1.00[EUR][1000 genomes]
rs73783720	1.00[EUR][1000 genomes]
rs73783721	1.00[EUR][1000 genomes]
rs73783729	1.00[EUR][1000 genomes]
rs73783750	1.00[EUR][1000 genomes]
rs73783751	1.00[EUR][1000 genomes]
rs73783752	1.00[EUR][1000 genomes]
rs73783753	1.00[EUR][1000 genomes]
rs7705339	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882752	chr5:116505127-116549323	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
2	nsv882753	chr5:116505127-116549669	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	nsv882754	chr5:116505127-116553503	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
4	nsv1015741	chr5:116525936-116665270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116541800-116550600	Weak transcription	Stomach Mucosa	stomach
2	chr5:116543000-116559000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:116544000-116544600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:116544000-116545200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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