Variant report
| Variant | rs57997641 |
|---|---|
| Chromosome Location | chr5:116581136-116581137 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1494822 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17141270 | 1.00[EUR][1000 genomes] |
| rs17141468 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17141492 | 1.00[ASN][1000 genomes] |
| rs17141496 | 1.00[ASN][1000 genomes] |
| rs56051865 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56303308 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56323145 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56357276 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58620997 | 1.00[ASN][1000 genomes] |
| rs60290895 | 1.00[EUR][1000 genomes] |
| rs60726905 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61213955 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61215989 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73262866 | 1.00[ASN][1000 genomes] |
| rs73266768 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73266777 | 1.00[ASN][1000 genomes] |
| rs73266798 | 1.00[EUR][1000 genomes] |
| rs73783719 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73783720 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73783721 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73783728 | 1.00[ASN][1000 genomes] |
| rs73783729 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73783750 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73783751 | 1.00[EUR][1000 genomes] |
| rs73783752 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73783753 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7705339 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015741 | chr5:116525936-116665270 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:116579800-116581400 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 2 | chr5:116581000-116583000 | Enhancers | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
