Variant report
| Variant | rs73266798 |
|---|---|
| Chromosome Location | chr5:116652308-116652309 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:116648124..116649695-chr5:116650114..116652832,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1494822 | 1.00[EUR][1000 genomes] |
| rs17141270 | 1.00[EUR][1000 genomes] |
| rs17141468 | 1.00[EUR][1000 genomes] |
| rs56051865 | 1.00[EUR][1000 genomes] |
| rs56303308 | 1.00[EUR][1000 genomes] |
| rs56323145 | 1.00[EUR][1000 genomes] |
| rs56357276 | 1.00[EUR][1000 genomes] |
| rs57997641 | 1.00[EUR][1000 genomes] |
| rs60290895 | 1.00[EUR][1000 genomes] |
| rs60726905 | 1.00[EUR][1000 genomes] |
| rs61213955 | 1.00[EUR][1000 genomes] |
| rs61215989 | 1.00[EUR][1000 genomes] |
| rs73266768 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73783719 | 1.00[EUR][1000 genomes] |
| rs73783720 | 1.00[EUR][1000 genomes] |
| rs73783721 | 1.00[EUR][1000 genomes] |
| rs73783729 | 1.00[EUR][1000 genomes] |
| rs73783750 | 1.00[EUR][1000 genomes] |
| rs73783751 | 1.00[EUR][1000 genomes] |
| rs73783752 | 1.00[EUR][1000 genomes] |
| rs73783753 | 1.00[EUR][1000 genomes] |
| rs7705339 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015741 | chr5:116525936-116665270 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv599486 | chr5:116607979-116669707 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv882755 | chr5:116647725-116748877 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:116652200-116653000 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
