Variant report

Variant	rs60726905
Chromosome Location	chr5:116548225-116548226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1494822	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141270	1.00[EUR][1000 genomes]
rs17141468	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141492	1.00[ASN][1000 genomes]
rs17141496	1.00[ASN][1000 genomes]
rs56051865	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56303308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56323145	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56357276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57997641	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58620997	1.00[ASN][1000 genomes]
rs60290895	1.00[EUR][1000 genomes]
rs61213955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61215989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73262866	1.00[ASN][1000 genomes]
rs73266768	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73266777	1.00[ASN][1000 genomes]
rs73266798	1.00[EUR][1000 genomes]
rs73783719	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73783720	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73783721	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73783728	1.00[ASN][1000 genomes]
rs73783729	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73783750	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73783751	1.00[EUR][1000 genomes]
rs73783752	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73783753	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7705339	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882752	chr5:116505127-116549323	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
2	nsv882753	chr5:116505127-116549669	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	nsv882754	chr5:116505127-116553503	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
4	nsv1015741	chr5:116525936-116665270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116541800-116550600	Weak transcription	Stomach Mucosa	stomach
2	chr5:116543000-116559000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:116547400-116548600	Enhancers	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links