Variant report
| Variant | rs17146314 |
|---|---|
| Chromosome Location | chr11:83589911-83589912 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs11233727 | 1.00[ASN][1000 genomes] |
| rs11233729 | 1.00[ASN][1000 genomes] |
| rs11233756 | 1.00[ASN][1000 genomes] |
| rs12364251 | 1.00[ASN][1000 genomes] |
| rs12786565 | 1.00[ASN][1000 genomes] |
| rs12787861 | 1.00[ASN][1000 genomes] |
| rs12792825 | 1.00[ASN][1000 genomes] |
| rs12797204 | 1.00[ASN][1000 genomes] |
| rs12802155 | 1.00[ASN][1000 genomes] |
| rs17481934 | 1.00[ASN][1000 genomes] |
| rs1892949 | 1.00[ASN][1000 genomes] |
| rs34514322 | 1.00[ASN][1000 genomes] |
| rs34520201 | 1.00[ASN][1000 genomes] |
| rs34873133 | 1.00[ASN][1000 genomes] |
| rs34994208 | 1.00[ASN][1000 genomes] |
| rs35047639 | 1.00[ASN][1000 genomes] |
| rs35248605 | 1.00[ASN][1000 genomes] |
| rs35301519 | 1.00[ASN][1000 genomes] |
| rs35627230 | 1.00[ASN][1000 genomes] |
| rs35954003 | 1.00[ASN][1000 genomes] |
| rs36110284 | 1.00[ASN][1000 genomes] |
| rs36125731 | 1.00[ASN][1000 genomes] |
| rs4456272 | 1.00[ASN][1000 genomes] |
| rs59576380 | 1.00[ASN][1000 genomes] |
| rs66848113 | 1.00[ASN][1000 genomes] |
| rs71465553 | 1.00[ASN][1000 genomes] |
| rs71465554 | 1.00[ASN][1000 genomes] |
| rs71465556 | 1.00[ASN][1000 genomes] |
| rs71465557 | 1.00[ASN][1000 genomes] |
| rs71465559 | 1.00[ASN][1000 genomes] |
| rs71468352 | 1.00[ASN][1000 genomes] |
| rs72958264 | 1.00[ASN][1000 genomes] |
| rs73515138 | 1.00[ASN][1000 genomes] |
| rs73515149 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv898019 | chr11:83556067-83602367 | ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 2 | nsv898020 | chr11:83558738-83602367 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 3 | nsv898021 | chr11:83562296-83602367 | Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 4 | nsv898022 | chr11:83562296-83602367 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 5 | nsv898023 | chr11:83566115-83602367 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 6 | nsv898024 | chr11:83576460-83602367 | Weak transcription Enhancers Strong transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:83577400-83606800 | Weak transcription | Brain Inferior Temporal Lobe | brain |
| 2 | chr11:83578000-83606800 | Weak transcription | Brain Substantia Nigra | brain |
| 3 | chr11:83585200-83606600 | Weak transcription | Brain Cingulate Gyrus | brain |
| 4 | chr11:83585200-83606600 | Weak transcription | Brain Hippocampus Middle | brain |
