Variant report

Variant	rs35301519
Chromosome Location	chr11:83436606-83436607
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr11:83435872-83436624	T-47D	breast:	n/a	chr11:83436411-83436421 chr11:83436216-83436230
2	FOXA1	chr11:83435821-83436646	T-47D	breast:	n/a	chr11:83436410-83436425
3	EP300	chr11:83435005-83436681	T-47D	breast:	n/a	chr11:83436411-83436421 chr11:83436216-83436230
4	POLR2A	chr11:83434865-83437197	SK-N-MC	brain:	n/a	n/a
5	GATA3	chr11:83435005-83436686	T-47D	breast:	n/a	chr11:83436485-83436495 chr11:83436312-83436322 chr11:83436313-83436320 chr11:83436313-83436320 chr11:83436306-83436327 chr11:83436313-83436322 chr11:83436313-83436320 chr11:83436309-83436325
6	JUND	chr11:83435371-83436719	T-47D	breast:	n/a	n/a
7	POLR2A	chr11:83433228-83437224	SK-N-MC	brain:	n/a	n/a
8	GATA3	chr11:83435000-83436678	T-47D	breast:	n/a	chr11:83436485-83436495 chr11:83436312-83436322 chr11:83436313-83436320 chr11:83436313-83436320 chr11:83436306-83436327 chr11:83436313-83436322 chr11:83436313-83436320 chr11:83436309-83436325
9	GATA2	chr11:83435591-83436648	SH-SY5Y	brain:	n/a	chr11:83436485-83436495 chr11:83436312-83436322 chr11:83436313-83436320 chr11:83436313-83436320 chr11:83436306-83436327 chr11:83436313-83436322 chr11:83436313-83436320 chr11:83436309-83436325

Variant related genes	Relation type
DLG2	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11233727	1.00[ASN][1000 genomes]
rs11233729	1.00[ASN][1000 genomes]
rs11233756	1.00[ASN][1000 genomes]
rs12364251	1.00[ASN][1000 genomes]
rs12786565	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12787861	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12791719	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12792825	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797204	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12800326	0.86[EUR][1000 genomes]
rs12802155	1.00[ASN][1000 genomes]
rs12803579	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12806068	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17146314	1.00[ASN][1000 genomes]
rs17463588	1.00[ASN][1000 genomes]
rs17481934	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1892949	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34514322	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34520201	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34718216	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34839973	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34843650	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34873133	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34994208	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35047639	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35248605	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35627230	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35954003	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36110284	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36125731	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4456272	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59576380	1.00[ASN][1000 genomes]
rs66848113	1.00[ASN][1000 genomes]
rs688984	1.00[AFR][1000 genomes]
rs71465552	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71465553	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465554	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465556	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465557	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465559	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71468352	1.00[ASN][1000 genomes]
rs72958264	1.00[ASN][1000 genomes]
rs73515138	1.00[ASN][1000 genomes]
rs73515149	1.00[ASN][1000 genomes]
rs977822	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83431600-83437800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:83434800-83437000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:83434800-83437000	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr11:83434800-83437200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr11:83435000-83437000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr11:83435000-83437000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr11:83435000-83437000	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr11:83435000-83437000	Enhancers	Brain Angular Gyrus	brain
9	chr11:83435000-83437000	Active TSS	Ovary	ovary
10	chr11:83435000-83437200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr11:83435200-83437000	Enhancers	Placenta Amnion	Placenta Amnion
12	chr11:83435200-83437400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:83435400-83436800	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr11:83435400-83437200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:83435600-83436800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:83435600-83436800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
17	chr11:83435600-83437000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
18	chr11:83435600-83437000	Enhancers	Brain Substantia Nigra	brain
19	chr11:83435600-83437200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:83435800-83437000	Flanking Active TSS	GM12878-XiMat	blood
21	chr11:83435800-83437200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:83436000-83436800	Enhancers	Brain Cingulate Gyrus	brain
23	chr11:83436000-83437000	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr11:83436000-83437000	Enhancers	Placenta	Placenta
25	chr11:83436000-83437000	Bivalent Enhancer	NH-A	brain
26	chr11:83436000-83437200	Enhancers	Fetal Brain Male	brain
27	chr11:83436200-83436800	Enhancers	Brain Germinal Matrix	brain
28	chr11:83436200-83437000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
29	chr11:83436200-83437200	Enhancers	Brain Hippocampus Middle	brain
30	chr11:83436200-83437200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:83436400-83436800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:83436400-83436800	Enhancers	Fetal Intestine Small	intestine
33	chr11:83436400-83436800	Active TSS	Fetal Muscle Leg	muscle
34	chr11:83436400-83437000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr11:83436400-83437000	Enhancers	Brain Anterior Caudate	brain
36	chr11:83436400-83437000	Enhancers	Fetal Stomach	stomach
37	chr11:83436400-83437200	Enhancers	Primary B cells from peripheral blood	blood
38	chr11:83436400-83437200	Enhancers	Fetal Heart	heart
39	chr11:83436400-83437200	Enhancers	Fetal Kidney	kidney
40	chr11:83436600-83436800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
41	chr11:83436600-83436800	Bivalent Enhancer	Primary B cells from cord blood	blood
42	chr11:83436600-83436800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:83436600-83436800	Active TSS	Fetal Lung	lung
44	chr11:83436600-83437400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr11:83436600-83437800	Weak transcription	Pancreas	Pancrea
46	chr11:83436600-83438000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr11:83436600-83438000	Enhancers	Cortex derived primary cultured neurospheres	brain

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