Variant report

Variant	rs12803579
Chromosome Location	chr11:83389547-83389548
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11233727	1.00[ASN][1000 genomes]
rs11233729	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11233756	1.00[ASN][1000 genomes]
rs12364251	1.00[ASN][1000 genomes]
rs12786327	0.86[EUR][1000 genomes]
rs12786565	1.00[ASN][1000 genomes]
rs12787861	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12791719	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12792825	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12797204	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs12802155	1.00[ASN][1000 genomes]
rs12806068	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17463588	1.00[ASN][1000 genomes]
rs17481934	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1892949	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34514322	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34520201	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34718216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34839973	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34843650	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34873133	1.00[ASN][1000 genomes]
rs34994208	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35047639	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35248605	1.00[ASN][1000 genomes]
rs35301519	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35627230	1.00[ASN][1000 genomes]
rs35954003	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36110284	1.00[ASN][1000 genomes]
rs36125731	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4456272	1.00[ASN][1000 genomes]
rs59576380	1.00[ASN][1000 genomes]
rs66700973	0.92[EUR][1000 genomes]
rs66848113	1.00[ASN][1000 genomes]
rs71465552	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465553	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71465554	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71465556	1.00[ASN][1000 genomes]
rs71465557	1.00[ASN][1000 genomes]
rs71465559	1.00[ASN][1000 genomes]
rs71468352	1.00[ASN][1000 genomes]
rs72958264	1.00[ASN][1000 genomes]
rs73515138	1.00[ASN][1000 genomes]
rs73515149	1.00[ASN][1000 genomes]
rs977822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83374800-83392000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:83378000-83390800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:83384200-83390200	Enhancers	Fetal Brain Male	brain
4	chr11:83386200-83391600	Weak transcription	Hela-S3	cervix
5	chr11:83387600-83391000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:83387800-83391800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:83387800-83392200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:83388200-83390800	Weak transcription	Fetal Heart	heart
9	chr11:83388600-83389800	Enhancers	Brain Substantia Nigra	brain
10	chr11:83388800-83389800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:83388800-83390200	Enhancers	Brain Cingulate Gyrus	brain
12	chr11:83389000-83389600	Enhancers	GM12878-XiMat	blood
13	chr11:83389200-83389800	Enhancers	Brain Anterior Caudate	brain
14	chr11:83389200-83390200	Enhancers	Brain Angular Gyrus	brain
15	chr11:83389200-83392400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:83389400-83389600	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr11:83389400-83389600	Flanking Active TSS	Fetal Brain Female	brain
18	chr11:83389400-83389600	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
19	chr11:83389400-83390200	Enhancers	Brain Hippocampus Middle	brain

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