Variant report

Variant	rs17481934
Chromosome Location	chr11:83436879-83436880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:83436680-83436880	MCF10A-Er-Src	breast:	n/a	n/a
2	RUNX3	chr11:83436758-83437122	GM12878	blood:	n/a	n/a
3	POLR2A	chr11:83434865-83437197	SK-N-MC	brain:	n/a	n/a
4	BHLHE40	chr11:83436825-83437100	GM12878	blood:	n/a	n/a
5	POLR2A	chr11:83433228-83437224	SK-N-MC	brain:	n/a	n/a

Variant related genes	Relation type
DLG2	TF binding region

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11233727	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233729	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233756	1.00[ASN][1000 genomes]
rs12364251	1.00[ASN][1000 genomes]
rs12786565	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12787861	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12791719	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12792825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797204	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12800326	0.89[EUR][1000 genomes]
rs12802155	1.00[ASN][1000 genomes]
rs12803579	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12806068	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17146314	1.00[ASN][1000 genomes]
rs17463588	1.00[ASN][1000 genomes]
rs1892949	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34514322	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34520201	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34718216	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34839973	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34843650	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34873133	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34994208	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35047639	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35248605	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35301519	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35627230	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35954003	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36110284	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36125731	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4456272	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59576380	1.00[ASN][1000 genomes]
rs66848113	1.00[ASN][1000 genomes]
rs71465552	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465553	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465554	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465556	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465557	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465559	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71468352	1.00[ASN][1000 genomes]
rs72958264	1.00[ASN][1000 genomes]
rs73515138	1.00[ASN][1000 genomes]
rs73515149	1.00[ASN][1000 genomes]
rs977822	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83431600-83437800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:83434800-83437000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:83434800-83437000	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr11:83434800-83437200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr11:83435000-83437000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr11:83435000-83437000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr11:83435000-83437000	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr11:83435000-83437000	Enhancers	Brain Angular Gyrus	brain
9	chr11:83435000-83437000	Active TSS	Ovary	ovary
10	chr11:83435000-83437200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr11:83435200-83437000	Enhancers	Placenta Amnion	Placenta Amnion
12	chr11:83435200-83437400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:83435400-83437200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:83435600-83437000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
15	chr11:83435600-83437000	Enhancers	Brain Substantia Nigra	brain
16	chr11:83435600-83437200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:83435800-83437000	Flanking Active TSS	GM12878-XiMat	blood
18	chr11:83435800-83437200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:83436000-83437000	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr11:83436000-83437000	Enhancers	Placenta	Placenta
21	chr11:83436000-83437000	Bivalent Enhancer	NH-A	brain
22	chr11:83436000-83437200	Enhancers	Fetal Brain Male	brain
23	chr11:83436200-83437000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr11:83436200-83437200	Enhancers	Brain Hippocampus Middle	brain
25	chr11:83436200-83437200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:83436400-83437000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr11:83436400-83437000	Enhancers	Brain Anterior Caudate	brain
28	chr11:83436400-83437000	Enhancers	Fetal Stomach	stomach
29	chr11:83436400-83437200	Enhancers	Primary B cells from peripheral blood	blood
30	chr11:83436400-83437200	Enhancers	Fetal Heart	heart
31	chr11:83436400-83437200	Enhancers	Fetal Kidney	kidney
32	chr11:83436600-83437400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr11:83436600-83437800	Weak transcription	Pancreas	Pancrea
34	chr11:83436600-83438000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:83436600-83438000	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr11:83436800-83437000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
37	chr11:83436800-83437600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:83436800-83437800	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr11:83436800-83438400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr11:83436800-83439400	Weak transcription	Fetal Lung	lung

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