Variant report

Variant	rs12806068
Chromosome Location	chr11:83405196-83405197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11233727	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233729	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233756	1.00[ASN][1000 genomes]
rs12364251	1.00[ASN][1000 genomes]
rs12786565	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12787861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12791719	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12792825	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797204	1.00[ASN][1000 genomes]
rs12800326	0.80[EUR][1000 genomes]
rs12802155	1.00[ASN][1000 genomes]
rs12803579	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17463588	1.00[ASN][1000 genomes]
rs17481934	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1892949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34514322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34520201	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34718216	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34839973	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34843650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34873133	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34994208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35047639	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35248605	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35301519	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35627230	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35954003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36110284	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36125731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4456272	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59576380	1.00[ASN][1000 genomes]
rs66848113	1.00[ASN][1000 genomes]
rs71465552	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465556	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465557	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465559	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71468352	1.00[ASN][1000 genomes]
rs72958264	1.00[ASN][1000 genomes]
rs73515138	1.00[ASN][1000 genomes]
rs73515149	1.00[ASN][1000 genomes]
rs977822	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83401400-83405800	Enhancers	Fetal Heart	heart
2	chr11:83402000-83405800	Enhancers	Brain Hippocampus Middle	brain
3	chr11:83402000-83407200	Enhancers	Brain Anterior Caudate	brain
4	chr11:83402200-83406600	Enhancers	Brain Substantia Nigra	brain
5	chr11:83402800-83405200	Weak transcription	Stomach Mucosa	stomach
6	chr11:83402800-83405800	Enhancers	Fetal Lung	lung
7	chr11:83402800-83409800	Weak transcription	Psoas Muscle	Psoas
8	chr11:83402800-83413000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:83403000-83405200	Weak transcription	Fetal Muscle Leg	muscle
10	chr11:83403000-83409800	Weak transcription	Pancreas	Pancrea
11	chr11:83403800-83405400	Enhancers	H9 Cell Line	embryonic stem cell
12	chr11:83403800-83406000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:83403800-83406000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:83403800-83406000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr11:83404200-83405200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr11:83404200-83405200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr11:83404200-83405400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr11:83404200-83405400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:83404200-83405400	Enhancers	Right Atrium	heart
20	chr11:83404200-83405400	Enhancers	Hela-S3	cervix
21	chr11:83404200-83405600	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr11:83404200-83405600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:83404200-83405800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:83404200-83406000	Enhancers	Brain Cingulate Gyrus	brain
25	chr11:83404400-83405200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:83404400-83405400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:83404400-83405400	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr11:83404400-83405600	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr11:83404400-83405800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr11:83404400-83405800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:83404400-83406000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr11:83404400-83406000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:83404400-83406000	Enhancers	HMEC	breast
34	chr11:83404600-83405400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
35	chr11:83404600-83405600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:83404600-83405600	Enhancers	Fetal Intestine Small	intestine
37	chr11:83404600-83406200	Enhancers	Duodenum Mucosa	Duodenum
38	chr11:83404800-83405400	Flanking Active TSS	Brain Angular Gyrus	brain
39	chr11:83404800-83405600	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr11:83404800-83405800	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr11:83404800-83405800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr11:83405000-83406000	Enhancers	Fetal Intestine Large	intestine
43	chr11:83405000-83406000	Enhancers	NHEK	skin

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