Variant report

Variant	rs12787861
Chromosome Location	chr11:83418812-83418813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11233727	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233729	1.00[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233756	1.00[ASN][1000 genomes]
rs12364251	1.00[ASN][1000 genomes]
rs12786565	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12791719	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12792825	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797204	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs12800326	0.80[EUR][1000 genomes]
rs12802155	1.00[ASN][1000 genomes]
rs12803579	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12806068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17146314	1.00[ASN][1000 genomes]
rs17463588	1.00[ASN][1000 genomes]
rs17481934	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1892949	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34514322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34520201	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34718216	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34839973	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34843650	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34873133	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34994208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35047639	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35248605	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35301519	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35627230	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35954003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36110284	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36125731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4456272	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59576380	1.00[ASN][1000 genomes]
rs66848113	1.00[ASN][1000 genomes]
rs71465552	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465554	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465556	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465557	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465559	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71468352	1.00[ASN][1000 genomes]
rs72958264	1.00[ASN][1000 genomes]
rs73515138	1.00[ASN][1000 genomes]
rs73515149	1.00[ASN][1000 genomes]
rs977822	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83413200-83424400	Weak transcription	Brain Anterior Caudate	brain
2	chr11:83418000-83419600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:83418000-83420400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:83418000-83429000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:83418400-83419800	Weak transcription	Hela-S3	cervix
6	chr11:83418600-83419800	Weak transcription	Fetal Intestine Large	intestine
7	chr11:83418800-83422200	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links