Variant report

Variant	rs71465552
Chromosome Location	chr11:83400950-83400951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11233727	1.00[ASN][1000 genomes]
rs11233729	1.00[ASN][1000 genomes]
rs11233756	1.00[ASN][1000 genomes]
rs12364251	1.00[ASN][1000 genomes]
rs12786565	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12787861	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12791719	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12792825	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797204	1.00[ASN][1000 genomes]
rs12802155	1.00[ASN][1000 genomes]
rs12803579	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12806068	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17463588	1.00[ASN][1000 genomes]
rs17481934	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1892949	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34514322	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34520201	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34718216	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34839973	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34843650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34873133	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34994208	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35047639	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35248605	1.00[ASN][1000 genomes]
rs35301519	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35627230	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35954003	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36110284	1.00[ASN][1000 genomes]
rs36125731	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4456272	1.00[ASN][1000 genomes]
rs59576380	1.00[ASN][1000 genomes]
rs66700973	0.89[EUR][1000 genomes]
rs66848113	1.00[ASN][1000 genomes]
rs71465553	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465554	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465556	1.00[ASN][1000 genomes]
rs71465557	1.00[ASN][1000 genomes]
rs71465559	1.00[ASN][1000 genomes]
rs71468352	1.00[ASN][1000 genomes]
rs72958264	1.00[ASN][1000 genomes]
rs73515138	1.00[ASN][1000 genomes]
rs73515149	1.00[ASN][1000 genomes]
rs977822	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350852	chr11:83400204-83402802	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83393000-83403800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:83393600-83402400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:83393600-83402400	Weak transcription	Pancreas	Pancrea
4	chr11:83393800-83401800	Weak transcription	Brain Angular Gyrus	brain
5	chr11:83394000-83402400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:83394000-83404400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:83394200-83402600	Weak transcription	Left Ventricle	heart
8	chr11:83394400-83402000	Weak transcription	Brain Anterior Caudate	brain
9	chr11:83394400-83402600	Weak transcription	Fetal Brain Male	brain
10	chr11:83399600-83402200	Weak transcription	Brain Substantia Nigra	brain
11	chr11:83399600-83402400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:83399600-83404200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:83399800-83401000	Enhancers	Fetal Heart	heart
14	chr11:83400200-83402200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:83400400-83402000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:83400400-83404800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr11:83400600-83402000	Weak transcription	Fetal Lung	lung
18	chr11:83400600-83402200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:83400800-83402000	Weak transcription	Brain Hippocampus Middle	brain
20	chr11:83400800-83402200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:83400800-83404200	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links