Variant report

Variant	rs17150951
Chromosome Location	chr7:25156025-25156026
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:25137124..25139625-chr7:25155619..25158589,2	K562	blood:
2	chr7:25143444..25146437-chr7:25155851..25157774,2	MCF-7	breast:
3	chr7:25136776..25141500-chr7:25154758..25157236,5	K562	blood:
4	chr7:25150657..25153569-chr7:25155939..25157650,2	MCF-7	breast:
5	chr7:25155653..25157985-chr7:25191729..25193957,3	K562	blood:
6	chr7:24910666..24915012-chr7:25154232..25157380,4	K562	blood:
7	chr7:25155338..25157200-chr7:25219925..25221656,2	K562	blood:
8	chr7:25155585..25158438-chr7:25208190..25210023,2	K562	blood:
9	chr7:25155898..25158442-chr7:25226325..25227872,2	MCF-7	breast:
10	chr7:24446190..24448060-chr7:25155446..25157150,2	MCF-7	breast:
11	chr7:24612512..24615169-chr7:25155476..25157619,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000105926	Chromatin interaction
ENSG00000153790	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10272108	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11768325	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2523079	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2523083	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2523085	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2523087	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2717872	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4629755	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62451611	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62451624	0.82[ASN][1000 genomes]
rs6969507	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17150951	CYCS	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25133000-25156400	Weak transcription	Right Atrium	heart
2	chr7:25149200-25157200	Weak transcription	A549	lung
3	chr7:25150400-25158600	Weak transcription	NHEK	skin
4	chr7:25150800-25158800	Weak transcription	Primary T cells from cord blood	blood
5	chr7:25151000-25158600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:25151200-25157800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:25151400-25158800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:25151400-25159400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr7:25152200-25157600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:25152200-25157800	Weak transcription	NHLF	lung
11	chr7:25152200-25158400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:25152200-25158400	Weak transcription	NH-A	brain
13	chr7:25152200-25159400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr7:25152200-25163400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr7:25152400-25158000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr7:25152400-25158400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:25153000-25158800	Weak transcription	Osteobl	bone
18	chr7:25153000-25159400	Weak transcription	Hela-S3	cervix
19	chr7:25153200-25157000	Weak transcription	Left Ventricle	heart
20	chr7:25153200-25163600	Weak transcription	Stomach Mucosa	stomach
21	chr7:25153400-25160000	Weak transcription	K562	blood
22	chr7:25153600-25156400	Weak transcription	Fetal Intestine Small	intestine
23	chr7:25154000-25160400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr7:25154800-25159200	Weak transcription	Dnd41	blood
25	chr7:25155000-25156600	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr7:25155200-25159200	Weak transcription	Brain Germinal Matrix	brain
27	chr7:25155400-25157200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr7:25155400-25158600	Weak transcription	Thymus	Thymus
29	chr7:25155400-25158800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr7:25155400-25161600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr7:25155600-25157200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr7:25155600-25157400	Weak transcription	HMEC	breast
33	chr7:25155600-25158800	Weak transcription	HUVEC	blood vessel
34	chr7:25155600-25159200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr7:25155600-25161200	Weak transcription	Ovary	ovary
36	chr7:25155600-25163400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr7:25155800-25156200	Weak transcription	HSMMtube	muscle
38	chr7:25155800-25158400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr7:25155800-25158600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr7:25155800-25159800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr7:25155800-25160400	Weak transcription	Colon Smooth Muscle	Colon
42	chr7:25156000-25156400	Genic enhancers	GM12878-XiMat	blood
43	chr7:25156000-25156800	Enhancers	Primary B cells from cord blood	blood
44	chr7:25156000-25157000	Enhancers	Primary B cells from peripheral blood	blood
45	chr7:25156000-25157200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr7:25156000-25158000	Weak transcription	NHDF-Ad	bronchial
47	chr7:25156000-25158200	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr7:25156000-25158400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr7:25156000-25158800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr7:25156000-25159200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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