Variant report

Variant	rs62451624
Chromosome Location	chr7:25217742-25217743
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:25162226..25166939-chr7:25217425..25223469,13	K562	blood:
2	chr7:25163234..25166939-chr7:25217425..25221477,8	K562	blood:

Variant related genes	Relation type
ENSG00000172115	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10272108	0.98[ASN][1000 genomes]
rs11768325	0.81[ASN][1000 genomes]
rs12673428	0.95[ASN][1000 genomes]
rs17150951	0.82[ASN][1000 genomes]
rs2523079	0.84[ASN][1000 genomes]
rs2523083	0.85[ASN][1000 genomes]
rs2523085	0.84[ASN][1000 genomes]
rs2523087	0.84[ASN][1000 genomes]
rs2717872	0.84[ASN][1000 genomes]
rs4629755	0.81[ASN][1000 genomes]
rs62451611	0.82[ASN][1000 genomes]
rs6969507	0.98[ASN][1000 genomes]
rs73691510	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25165600-25218800	Weak transcription	Colonic Mucosa	Colon
2	chr7:25165600-25219200	Weak transcription	Left Ventricle	heart
3	chr7:25165800-25219000	Weak transcription	Fetal Lung	lung
4	chr7:25166000-25218800	Weak transcription	Brain Anterior Caudate	brain
5	chr7:25168000-25218800	Weak transcription	Gastric	stomach
6	chr7:25172400-25218800	Weak transcription	GM12878-XiMat	blood
7	chr7:25172600-25218600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:25179800-25218800	Weak transcription	Pancreas	Pancrea
9	chr7:25190000-25218800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:25190200-25219000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr7:25192200-25218800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr7:25192200-25218800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr7:25194400-25219000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:25194800-25218800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr7:25194800-25218800	Weak transcription	Thymus	Thymus
16	chr7:25194800-25219200	Weak transcription	Ovary	ovary
17	chr7:25195000-25218800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr7:25196000-25218800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr7:25197000-25218800	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr7:25197400-25218600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:25197600-25218800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:25199200-25219000	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr7:25204000-25218800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr7:25204400-25219000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr7:25205600-25218800	Weak transcription	Adipose Nuclei	Adipose
26	chr7:25205800-25218800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr7:25205800-25219200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr7:25206000-25219000	Weak transcription	Aorta	Aorta
29	chr7:25207000-25218800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr7:25207200-25218600	Weak transcription	Dnd41	blood
31	chr7:25207400-25218800	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr7:25207600-25218600	Weak transcription	Primary B cells from peripheral blood	blood
33	chr7:25207600-25218800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr7:25208200-25218800	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr7:25211400-25219000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr7:25212000-25218800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr7:25212000-25218800	Weak transcription	Duodenum Mucosa	Duodenum
38	chr7:25212000-25218800	Weak transcription	Stomach Mucosa	stomach
39	chr7:25212400-25218800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr7:25213200-25218600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr7:25213200-25219400	Weak transcription	Small Intestine	intestine
42	chr7:25213400-25218800	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr7:25214000-25218600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr7:25214000-25218800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr7:25214000-25219000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr7:25215600-25218800	Weak transcription	Primary B cells from cord blood	blood
47	chr7:25216200-25219200	Weak transcription	Primary T cells from cord blood	blood

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