Variant report

Variant	rs4629755
Chromosome Location	chr7:25143750-25143751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10272108	0.80[ASN][1000 genomes]
rs11768325	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12673428	0.81[ASN][1000 genomes]
rs17150951	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2523079	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2523083	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2523085	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2523087	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2717872	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62451611	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62451624	0.81[ASN][1000 genomes]
rs6969507	0.93[JPT][hapmap];0.82[YRI][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs4629755	HOXA2	cis	cerebellum	SCAN
rs4629755	HOXA9	cis	parietal	SCAN
rs4629755	HOXA7	cis	cerebellum	SCAN
rs4629755	NUPL2	cis	parietal	SCAN
rs4629755	STK31	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25133000-25156400	Weak transcription	Right Atrium	heart
2	chr7:25143200-25143800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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