Variant report

Variant	rs2523087
Chromosome Location	chr7:25180275-25180276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10272108	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11768325	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12673428	0.81[ASN][1000 genomes]
rs17150951	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2523079	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2523083	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2523085	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2717872	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4629755	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62451611	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62451624	0.84[ASN][1000 genomes]
rs6969507	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2523087	CYCS	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25165400-25209800	Weak transcription	Spleen	Spleen
2	chr7:25165600-25189400	Weak transcription	Lung	lung
3	chr7:25165600-25191400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:25165600-25193400	Weak transcription	Ovary	ovary
5	chr7:25165600-25213000	Weak transcription	Small Intestine	intestine
6	chr7:25165600-25218800	Weak transcription	Colonic Mucosa	Colon
7	chr7:25165600-25219200	Weak transcription	Left Ventricle	heart
8	chr7:25165800-25191200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr7:25165800-25191400	Weak transcription	Thymus	Thymus
10	chr7:25165800-25194400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:25165800-25200400	Weak transcription	Fetal Kidney	kidney
12	chr7:25165800-25219000	Weak transcription	Fetal Lung	lung
13	chr7:25166000-25194200	Weak transcription	Fetal Thymus	thymus
14	chr7:25166000-25218800	Weak transcription	Brain Anterior Caudate	brain
15	chr7:25168000-25206800	Weak transcription	Fetal Intestine Small	intestine
16	chr7:25168000-25218800	Weak transcription	Gastric	stomach
17	chr7:25169200-25193400	Weak transcription	Adipose Nuclei	Adipose
18	chr7:25172400-25190200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr7:25172400-25193200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr7:25172400-25193400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr7:25172400-25193600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr7:25172400-25218800	Weak transcription	GM12878-XiMat	blood
23	chr7:25172600-25180600	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr7:25172600-25189200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr7:25172600-25193400	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr7:25172600-25193600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr7:25172600-25193600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr7:25172600-25198600	Weak transcription	Dnd41	blood
29	chr7:25172600-25218600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr7:25173800-25193600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr7:25174200-25193800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr7:25174400-25189400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:25175000-25185800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr7:25175000-25188000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr7:25176200-25185800	Weak transcription	Primary B cells from peripheral blood	blood
36	chr7:25176200-25189600	Weak transcription	Primary T cells from cord blood	blood
37	chr7:25176400-25189600	Weak transcription	Primary B cells from cord blood	blood
38	chr7:25176400-25189600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr7:25176600-25181400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr7:25176600-25193200	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr7:25176800-25189000	Weak transcription	Duodenum Mucosa	Duodenum
42	chr7:25176800-25191200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr7:25179600-25194000	Weak transcription	Fetal Stomach	stomach
44	chr7:25179800-25218800	Weak transcription	Pancreas	Pancrea
45	chr7:25180000-25182000	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr7:25180000-25183400	Weak transcription	Aorta	Aorta
47	chr7:25180200-25185800	Weak transcription	Rectal Mucosa Donor 29	rectum

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