Variant report

Variant	rs62451611
Chromosome Location	chr7:25159348-25159349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:25157220..25159707-chr7:25198924..25201773,3	K562	blood:
2	chr7:24759478..24761172-chr7:25157886..25160786,2	K562	blood:
3	chr7:24964128..24965983-chr7:25157200..25159724,2	K562	blood:
4	chr7:25115153..25117812-chr7:25158771..25160926,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10272108	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11768325	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17150951	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2523079	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2523083	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2523085	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2523087	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2717872	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4629755	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62451624	0.82[ASN][1000 genomes]
rs6969507	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62451611	CYCS	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25151400-25159400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr7:25152200-25159400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr7:25152200-25163400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:25153000-25159400	Weak transcription	Hela-S3	cervix
5	chr7:25153200-25163600	Weak transcription	Stomach Mucosa	stomach
6	chr7:25153400-25160000	Weak transcription	K562	blood
7	chr7:25154000-25160400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:25155400-25161600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr7:25155600-25161200	Weak transcription	Ovary	ovary
10	chr7:25155600-25163400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:25155800-25159800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr7:25155800-25160400	Weak transcription	Colon Smooth Muscle	Colon
13	chr7:25156600-25160600	Weak transcription	Gastric	stomach
14	chr7:25156600-25163400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr7:25156600-25163400	Weak transcription	Right Atrium	heart
16	chr7:25156600-25164000	Weak transcription	Esophagus	oesophagus
17	chr7:25156600-25164000	Weak transcription	Spleen	Spleen
18	chr7:25157200-25159400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr7:25157200-25160200	Weak transcription	Lung	lung
20	chr7:25157200-25160800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:25157200-25161200	Weak transcription	Small Intestine	intestine
22	chr7:25157200-25161800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr7:25157200-25162000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:25157200-25162000	Strong transcription	A549	lung
25	chr7:25157200-25162200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr7:25157200-25163800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr7:25157400-25160000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr7:25157400-25161600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr7:25157400-25161600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr7:25157400-25161600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr7:25157400-25162000	Strong transcription	HMEC	breast
32	chr7:25157600-25161600	Weak transcription	Fetal Heart	heart
33	chr7:25157600-25161800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr7:25157600-25162200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr7:25157600-25162600	Strong transcription	Fetal Thymus	thymus
36	chr7:25157800-25159400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr7:25157800-25159400	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr7:25157800-25159400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr7:25157800-25160200	Weak transcription	Fetal Intestine Small	intestine
40	chr7:25157800-25160200	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr7:25157800-25161200	Weak transcription	Aorta	Aorta
42	chr7:25157800-25163400	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr7:25157800-25163400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr7:25157800-25163400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr7:25157800-25163600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr7:25157800-25163800	Weak transcription	Brain Angular Gyrus	brain
47	chr7:25157800-25164000	Weak transcription	Pancreas	Pancrea
48	chr7:25158000-25159400	Weak transcription	HepG2	liver
49	chr7:25158000-25159600	Weak transcription	Placenta	Placenta
50	chr7:25158000-25161400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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