Variant report

Variant	rs17154625
Chromosome Location	chr7:80626517-80626518
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80623727..80626571-chr7:80632803..80635614,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10243366	1.00[EUR][1000 genomes]
rs10499866	1.00[EUR][1000 genomes]
rs10499867	1.00[EUR][1000 genomes]
rs10499868	1.00[EUR][1000 genomes]
rs1406391	1.00[EUR][1000 genomes]
rs16886939	1.00[EUR][1000 genomes]
rs17154734	1.00[EUR][1000 genomes]
rs17154789	1.00[EUR][1000 genomes]
rs1881542	1.00[EUR][1000 genomes]
rs2367107	1.00[EUR][1000 genomes]
rs3891959	1.00[EUR][1000 genomes]
rs56661645	1.00[EUR][1000 genomes]
rs56923909	1.00[EUR][1000 genomes]
rs56992458	1.00[EUR][1000 genomes]
rs59232679	1.00[EUR][1000 genomes]
rs59248712	1.00[EUR][1000 genomes]
rs59283036	1.00[EUR][1000 genomes]
rs59515047	1.00[EUR][1000 genomes]
rs60302424	1.00[EUR][1000 genomes]
rs61022986	1.00[EUR][1000 genomes]
rs61242250	1.00[EUR][1000 genomes]
rs6945017	1.00[EUR][1000 genomes]
rs6947445	1.00[EUR][1000 genomes]
rs6954567	1.00[EUR][1000 genomes]
rs6954716	1.00[EUR][1000 genomes]
rs6955012	1.00[EUR][1000 genomes]
rs6955165	1.00[EUR][1000 genomes]
rs6955495	1.00[EUR][1000 genomes]
rs6978218	1.00[EUR][1000 genomes]
rs6978720	1.00[EUR][1000 genomes]
rs7780684	1.00[EUR][1000 genomes]
rs7801407	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv888549	chr7:80553950-80652059	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv888550	chr7:80584388-80644661	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv5812	chr7:80601278-80645927	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv521001	chr7:80618038-80644661	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv888551	chr7:80620397-80723062	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80624800-80627000	Weak transcription	Brain Germinal Matrix	brain
2	chr7:80625400-80638200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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