Variant report
| Variant | rs7801407 |
|---|---|
| Chromosome Location | chr7:80664333-80664334 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:80547706..80549655-chr7:80663458..80666420,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000075223 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10243366 | 1.00[EUR][1000 genomes] |
| rs10499866 | 1.00[EUR][1000 genomes] |
| rs10499867 | 1.00[EUR][1000 genomes] |
| rs10499868 | 1.00[EUR][1000 genomes] |
| rs1406391 | 1.00[EUR][1000 genomes] |
| rs16886939 | 1.00[EUR][1000 genomes] |
| rs17154625 | 1.00[EUR][1000 genomes] |
| rs17154734 | 1.00[EUR][1000 genomes] |
| rs17154789 | 1.00[EUR][1000 genomes] |
| rs1881542 | 1.00[EUR][1000 genomes] |
| rs2367107 | 1.00[EUR][1000 genomes] |
| rs3891959 | 1.00[EUR][1000 genomes] |
| rs56661645 | 1.00[EUR][1000 genomes] |
| rs56923909 | 1.00[EUR][1000 genomes] |
| rs56992458 | 1.00[EUR][1000 genomes] |
| rs59232679 | 1.00[EUR][1000 genomes] |
| rs59248712 | 1.00[EUR][1000 genomes] |
| rs59283036 | 1.00[EUR][1000 genomes] |
| rs59471742 | 0.97[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs59515047 | 1.00[EUR][1000 genomes] |
| rs60302424 | 1.00[EUR][1000 genomes] |
| rs61022986 | 1.00[EUR][1000 genomes] |
| rs61242250 | 1.00[EUR][1000 genomes] |
| rs6945017 | 1.00[EUR][1000 genomes] |
| rs6947445 | 1.00[EUR][1000 genomes] |
| rs6954567 | 1.00[EUR][1000 genomes] |
| rs6954716 | 1.00[EUR][1000 genomes] |
| rs6955012 | 1.00[EUR][1000 genomes] |
| rs6955165 | 1.00[EUR][1000 genomes] |
| rs6955495 | 1.00[EUR][1000 genomes] |
| rs6978218 | 1.00[EUR][1000 genomes] |
| rs6978720 | 1.00[EUR][1000 genomes] |
| rs7780684 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv888524 | chr7:80107798-80723062 | Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 2 | nsv1034690 | chr7:80520004-80987682 | Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 3 | nsv888551 | chr7:80620397-80723062 | Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:80659000-80666400 | Weak transcription | Fetal Muscle Leg | muscle |
| 2 | chr7:80659200-80665600 | Weak transcription | HSMM | muscle |
| 3 | chr7:80659600-80664800 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
