Variant report
| Variant | rs59283036 |
|---|---|
| Chromosome Location | chr7:80645607-80645608 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000075223 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10243366 | 1.00[EUR][1000 genomes] |
| rs10499866 | 1.00[EUR][1000 genomes] |
| rs10499867 | 1.00[EUR][1000 genomes] |
| rs10499868 | 1.00[EUR][1000 genomes] |
| rs1406391 | 1.00[EUR][1000 genomes] |
| rs16886939 | 1.00[EUR][1000 genomes] |
| rs17154625 | 1.00[EUR][1000 genomes] |
| rs17154734 | 1.00[EUR][1000 genomes] |
| rs17154789 | 1.00[EUR][1000 genomes] |
| rs1881542 | 1.00[EUR][1000 genomes] |
| rs2367107 | 1.00[EUR][1000 genomes] |
| rs3891959 | 1.00[EUR][1000 genomes] |
| rs56661645 | 1.00[EUR][1000 genomes] |
| rs56923909 | 1.00[EUR][1000 genomes] |
| rs56992458 | 1.00[EUR][1000 genomes] |
| rs58800760 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs59232679 | 1.00[EUR][1000 genomes] |
| rs59248712 | 1.00[EUR][1000 genomes] |
| rs59515047 | 1.00[EUR][1000 genomes] |
| rs60302424 | 1.00[EUR][1000 genomes] |
| rs61022986 | 1.00[EUR][1000 genomes] |
| rs61242250 | 1.00[EUR][1000 genomes] |
| rs67058745 | 0.92[AFR][1000 genomes] |
| rs6945017 | 1.00[EUR][1000 genomes] |
| rs6947445 | 1.00[EUR][1000 genomes] |
| rs6954567 | 1.00[EUR][1000 genomes] |
| rs6954716 | 1.00[EUR][1000 genomes] |
| rs6955012 | 1.00[EUR][1000 genomes] |
| rs6955165 | 1.00[EUR][1000 genomes] |
| rs6955495 | 1.00[EUR][1000 genomes] |
| rs6978218 | 1.00[EUR][1000 genomes] |
| rs6978720 | 1.00[EUR][1000 genomes] |
| rs7780684 | 1.00[EUR][1000 genomes] |
| rs7801407 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv888524 | chr7:80107798-80723062 | Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 2 | nsv1034690 | chr7:80520004-80987682 | Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 3 | nsv888549 | chr7:80553950-80652059 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv5812 | chr7:80601278-80645927 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv888551 | chr7:80620397-80723062 | Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
