Variant report

Variant	rs56661645
Chromosome Location	chr7:80739962-80739963
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10243366	1.00[EUR][1000 genomes]
rs10499866	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10499867	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10499868	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1406391	1.00[EUR][1000 genomes]
rs16886939	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17154625	1.00[EUR][1000 genomes]
rs17154734	1.00[EUR][1000 genomes]
rs17154781	0.90[AMR][1000 genomes]
rs17154789	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1881542	1.00[EUR][1000 genomes]
rs2367107	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3891959	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56923909	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56992458	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59232679	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59248712	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59283036	1.00[EUR][1000 genomes]
rs59515047	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60302424	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61022986	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61242250	1.00[EUR][1000 genomes]
rs6945017	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6947445	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6954567	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6954716	1.00[EUR][1000 genomes]
rs6955012	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6955165	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6955495	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6978218	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6978720	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7780684	1.00[EUR][1000 genomes]
rs7801407	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv888552	chr7:80683308-80755310	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv888553	chr7:80683308-80766407	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv888554	chr7:80695828-80755310	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv888555	chr7:80695828-80766407	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv888556	chr7:80695828-80797794	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80738400-80743400	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr7:80739400-80740800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:80739600-80740800	Enhancers	A549	lung
4	chr7:80739800-80740600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:80739800-80741400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:80739800-80741400	Enhancers	HMEC	breast
7	chr7:80739800-80741400	Enhancers	HSMM	muscle
8	chr7:80739800-80741600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:80739800-80742400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:80739800-80742400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:80739800-80743200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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