Variant report
| Variant | rs1881542 |
|---|---|
| Chromosome Location | chr7:80696415-80696416 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:80695425..80696985-chr7:80792014..80793574,2 | MCF-7 | breast: | |
| 2 | chr7:80547198..80550195-chr7:80695484..80697317,2 | MCF-7 | breast: | |
| 3 | chr7:80550268..80552469-chr7:80695848..80697733,3 | MCF-7 | breast: | |
| 4 | chr7:80692851..80695599-chr7:80695778..80697561,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000075223 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10243366 | 0.80[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10499866 | 1.00[EUR][1000 genomes] |
| rs10499867 | 1.00[EUR][1000 genomes] |
| rs10499868 | 1.00[EUR][1000 genomes] |
| rs1406391 | 1.00[EUR][1000 genomes] |
| rs16886939 | 1.00[EUR][1000 genomes] |
| rs17154625 | 1.00[EUR][1000 genomes] |
| rs17154734 | 1.00[EUR][1000 genomes] |
| rs17154789 | 1.00[EUR][1000 genomes] |
| rs2367107 | 1.00[EUR][1000 genomes] |
| rs3891959 | 1.00[EUR][1000 genomes] |
| rs56661645 | 1.00[EUR][1000 genomes] |
| rs56923909 | 1.00[EUR][1000 genomes] |
| rs56992458 | 1.00[EUR][1000 genomes] |
| rs59232679 | 1.00[EUR][1000 genomes] |
| rs59248712 | 1.00[EUR][1000 genomes] |
| rs59283036 | 1.00[EUR][1000 genomes] |
| rs59515047 | 1.00[EUR][1000 genomes] |
| rs60302424 | 1.00[EUR][1000 genomes] |
| rs61022986 | 1.00[EUR][1000 genomes] |
| rs61242250 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6945017 | 1.00[EUR][1000 genomes] |
| rs6947445 | 1.00[EUR][1000 genomes] |
| rs6954567 | 1.00[EUR][1000 genomes] |
| rs6954716 | 1.00[EUR][1000 genomes] |
| rs6955012 | 1.00[EUR][1000 genomes] |
| rs6955165 | 1.00[EUR][1000 genomes] |
| rs6955495 | 1.00[EUR][1000 genomes] |
| rs6978218 | 1.00[EUR][1000 genomes] |
| rs6978720 | 1.00[EUR][1000 genomes] |
| rs7780684 | 1.00[EUR][1000 genomes] |
| rs7801407 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv888524 | chr7:80107798-80723062 | Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 2 | nsv1034690 | chr7:80520004-80987682 | Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 3 | nsv888551 | chr7:80620397-80723062 | Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv888552 | chr7:80683308-80755310 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv888553 | chr7:80683308-80766407 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 6 | nsv888554 | chr7:80695828-80755310 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 7 | nsv888555 | chr7:80695828-80766407 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 8 | nsv888556 | chr7:80695828-80797794 | Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
