Variant report

Variant	rs17159251
Chromosome Location	chr11:64257549-64257550
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64256978..64257884-chr11:64420241..64421230,8	MCF-7	breast:
2	chr11:64256984..64257844-chr11:64455887..64456438,2	MCF-7	breast:
3	chr11:64256445..64261724-chr11:64264321..64268271,6	K562	blood:
4	chr11:64257004..64257861-chr11:64353156..64354091,3	MCF-7	breast:
5	chr11:64255791..64258393-chr11:64259591..64262229,2	K562	blood:
6	chr11:64256654..64257864-chr11:64416618..64417741,8	K562	blood:
7	chr11:64215501..64216385-chr11:64257036..64257826,2	K562	blood:
8	chr11:64257408..64258030-chr11:64420262..64420923,4	MCF-7	breast:
9	chr11:64257134..64257864-chr11:64416990..64417693,2	MCF-7	breast:
10	chr11:64256962..64257955-chr11:64415412..64417537,12	MCF-7	breast:

No data

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1207462	1.00[EUR][1000 genomes]
rs12575515	1.00[EUR][1000 genomes]
rs34318219	1.00[EUR][1000 genomes]
rs490720	1.00[EUR][1000 genomes]
rs539008	1.00[EUR][1000 genomes]
rs554812	1.00[EUR][1000 genomes]
rs569741	1.00[EUR][1000 genomes]
rs575081	1.00[EUR][1000 genomes]
rs58010797	1.00[EUR][1000 genomes]
rs58488481	1.00[EUR][1000 genomes]
rs6591855	1.00[EUR][1000 genomes]
rs7115265	1.00[EUR][1000 genomes]
rs7124976	1.00[EUR][1000 genomes]
rs71579879	1.00[EUR][1000 genomes]
rs72559736	1.00[EUR][1000 genomes]
rs73488285	1.00[EUR][1000 genomes]
rs73488288	1.00[EUR][1000 genomes]
rs73488293	1.00[EUR][1000 genomes]
rs73488297	1.00[EUR][1000 genomes]
rs73490206	1.00[EUR][1000 genomes]
rs73490261	1.00[EUR][1000 genomes]
rs7947416	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1035485	chr11:64228847-64354869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64257000-64258600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr11:64257000-64258600	Enhancers	Fetal Thymus	thymus
3	chr11:64257200-64257600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:64257200-64257600	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr11:64257200-64257600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
6	chr11:64257200-64257600	Enhancers	K562	blood
7	chr11:64257200-64257800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:64257200-64257800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr11:64257200-64257800	Bivalent Enhancer	Placenta	Placenta
10	chr11:64257200-64258000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
11	chr11:64257200-64258200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:64257200-64258200	Flanking Active TSS	Brain Germinal Matrix	brain
13	chr11:64257200-64258200	Enhancers	Fetal Brain Male	brain
14	chr11:64257200-64258400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:64257200-64258400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr11:64257200-64258400	Enhancers	Spleen	Spleen
17	chr11:64257200-64258600	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr11:64257200-64258600	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:64257200-64258600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:64257400-64257600	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
21	chr11:64257400-64257600	Active TSS	Brain Anterior Caudate	brain
22	chr11:64257400-64257800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
23	chr11:64257400-64257800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
24	chr11:64257400-64257800	Enhancers	Primary hematopoietic stem cells	blood
25	chr11:64257400-64257800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:64257400-64257800	Enhancers	Brain Substantia Nigra	brain
27	chr11:64257400-64257800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
28	chr11:64257400-64257800	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr11:64257400-64258000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:64257400-64258000	Flanking Active TSS	Fetal Brain Female	brain
31	chr11:64257400-64258200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
32	chr11:64257400-64258600	Enhancers	Primary B cells from peripheral blood	blood
33	chr11:64257400-64258600	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr11:64257400-64258600	Enhancers	Thymus	Thymus

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