Variant report

Variant	rs73490261
Chromosome Location	chr11:64293537-64293538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:64286097-64295047	K562	blood:	n/a	n/a

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	11:64207610-64216678..11:64292231-64296082	K562	blood:
2	chr11:64287120..64288919-chr11:64293173..64295896,2	K562	blood:
3	11:64292231-64296082..11:64523887-64530985	GM12878	blood:
4	11:64292231-64296082..11:64489786-64499245	GM12878	blood:
5	11:64292231-64296082..11:64356433-64395036	K562	blood:
6	11:64292231-64296082..11:64426650-64437729	K562	blood:
7	11:64292231-64296082..11:64501239-64517861	Hela-S3	cervix:
8	11:64292231-64296082..11:64530985-64535815	Hela-S3	cervix:
9	11:64292231-64296082..11:64402707-64415880	GM12878	blood:
10	chr11:64291776..64294104-chr11:64295079..64298066,2	MCF-7	breast:
11	11:64292231-64296082..11:64415880-64426617	H1-hESC	embryonic stem cell:	embryo
12	chr11:64292805..64295526-chr11:64302050..64304277,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000237363	TF binding region
ENSG00000168066	Chromatin interaction
ENSG00000068831	Chromatin interaction
ENSG00000197891	Chromatin interaction
ENSG00000110076	Chromatin interaction
ENSG00000237410	Chromatin interaction
ENSG00000181908	Chromatin interaction
ENSG00000068976	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1207462	1.00[EUR][1000 genomes]
rs12575515	1.00[EUR][1000 genomes]
rs17159251	1.00[EUR][1000 genomes]
rs34318219	1.00[EUR][1000 genomes]
rs490720	1.00[EUR][1000 genomes]
rs539008	1.00[EUR][1000 genomes]
rs554812	1.00[EUR][1000 genomes]
rs569741	1.00[EUR][1000 genomes]
rs575081	1.00[EUR][1000 genomes]
rs58010797	1.00[EUR][1000 genomes]
rs58488481	1.00[EUR][1000 genomes]
rs6591855	1.00[EUR][1000 genomes]
rs7115265	1.00[EUR][1000 genomes]
rs7124976	1.00[EUR][1000 genomes]
rs71579879	1.00[EUR][1000 genomes]
rs72559736	1.00[EUR][1000 genomes]
rs73488285	1.00[EUR][1000 genomes]
rs73488288	1.00[EUR][1000 genomes]
rs73488293	1.00[EUR][1000 genomes]
rs73488297	1.00[EUR][1000 genomes]
rs73490206	1.00[EUR][1000 genomes]
rs7947416	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1035485	chr11:64228847-64354869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64289600-64293800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr11:64289800-64293600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr11:64291400-64294000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:64292000-64294000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:64292600-64295400	Enhancers	Fetal Thymus	thymus
6	chr11:64292800-64293800	Enhancers	Primary hematopoietic stem cells	blood
7	chr11:64292800-64304000	Weak transcription	Right Atrium	heart
8	chr11:64293400-64293600	Enhancers	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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