Variant report

Variant	rs72559736
Chromosome Location	chr11:64323507-64323508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1207462	1.00[EUR][1000 genomes]
rs12575515	1.00[EUR][1000 genomes]
rs17159251	1.00[EUR][1000 genomes]
rs34318219	1.00[EUR][1000 genomes]
rs490720	1.00[EUR][1000 genomes]
rs539008	1.00[EUR][1000 genomes]
rs554812	1.00[EUR][1000 genomes]
rs569741	1.00[EUR][1000 genomes]
rs575081	1.00[EUR][1000 genomes]
rs58010797	1.00[EUR][1000 genomes]
rs58488481	1.00[EUR][1000 genomes]
rs6591855	1.00[EUR][1000 genomes]
rs7115265	1.00[EUR][1000 genomes]
rs7124976	1.00[EUR][1000 genomes]
rs71579879	1.00[EUR][1000 genomes]
rs73488285	1.00[EUR][1000 genomes]
rs73488288	1.00[EUR][1000 genomes]
rs73488293	1.00[EUR][1000 genomes]
rs73488297	1.00[EUR][1000 genomes]
rs73490206	1.00[EUR][1000 genomes]
rs73490261	1.00[EUR][1000 genomes]
rs7947416	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035485	chr11:64228847-64354869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv897692	chr11:64305452-64386526	Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
3	nsv897693	chr11:64305452-64440920	Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	esv2422214	chr11:64312491-64483418	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv832188	chr11:64315368-64485209	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64320600-64323600	Enhancers	Fetal Lung	lung
2	chr11:64320600-64324400	Enhancers	Spleen	Spleen
3	chr11:64320800-64323600	Enhancers	Fetal Stomach	stomach
4	chr11:64320800-64323600	Enhancers	Ovary	ovary
5	chr11:64320800-64324600	Enhancers	Fetal Muscle Leg	muscle
6	chr11:64320800-64324800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:64320800-64326000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:64321200-64323600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:64321200-64323600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr11:64321200-64323600	Enhancers	Colonic Mucosa	Colon
11	chr11:64321200-64323600	Enhancers	HSMM	muscle
12	chr11:64321200-64323600	Enhancers	HSMMtube	muscle
13	chr11:64321200-64323600	Enhancers	NH-A	brain
14	chr11:64321200-64324000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr11:64321200-64324200	Enhancers	Fetal Thymus	thymus
16	chr11:64321200-64324400	Enhancers	Fetal Intestine Small	intestine
17	chr11:64321200-64325000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr11:64321200-64325200	Enhancers	Fetal Intestine Large	intestine
19	chr11:64321400-64323600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:64321400-64324200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:64321600-64324600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:64321600-64324800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr11:64321600-64325000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:64321800-64323600	Enhancers	Placenta Amnion	Placenta Amnion
25	chr11:64321800-64324600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr11:64321800-64325800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr11:64321800-64325800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:64322000-64323800	Enhancers	Pancreas	Pancrea
29	chr11:64322200-64323600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:64322600-64323600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:64322600-64324200	Flanking Active TSS	HepG2	liver
32	chr11:64322800-64323600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:64322800-64324000	Enhancers	K562	blood
34	chr11:64322800-64325800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr11:64322800-64327200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:64322800-64334000	Weak transcription	Right Atrium	heart
37	chr11:64323000-64323600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:64323000-64323600	Flanking Active TSS	Liver	Liver
39	chr11:64323000-64333400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr11:64323200-64323600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
41	chr11:64323200-64323600	Enhancers	A549	lung
42	chr11:64323200-64325800	Weak transcription	Primary B cells from peripheral blood	blood
43	chr11:64323200-64326800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:64323200-64327600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr11:64323400-64323600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:64323400-64323600	Active TSS	Fetal Kidney	kidney
47	chr11:64323400-64325200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:64323400-64325200	Flanking Active TSS	Placenta	Placenta

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