Variant report
| Variant | rs73488293 |
|---|---|
| Chromosome Location | chr11:64248459-64248460 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 11:64233404-64254719..11:64489786-64499245 | Hela-S3 | cervix: | |
| 2 | chr11:64246575..64249101-chr11:64251489..64253338,2 | K562 | blood: | |
| 3 | 11:64233404-64254719..11:64626490-64631647 | Hela-S3 | cervix: | |
| 4 | 11:64233404-64254719..11:64544826-64559210 | Hela-S3 | cervix: | |
| 5 | 11:64233404-64254719..11:64415880-64426617 | H1-hESC | embryonic stem cell: | embryo |
| 6 | chr11:64240663..64242739-chr11:64246374..64248758,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000110076 | Chromatin interaction |
| ENSG00000269038 | Chromatin interaction |
| ENSG00000168066 | Chromatin interaction |
| ENSG00000110047 | Chromatin interaction |
| ENSG00000269290 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1207462 | 1.00[EUR][1000 genomes] |
| rs12575515 | 1.00[EUR][1000 genomes] |
| rs17159251 | 1.00[EUR][1000 genomes] |
| rs34318219 | 1.00[EUR][1000 genomes] |
| rs490720 | 1.00[EUR][1000 genomes] |
| rs539008 | 1.00[EUR][1000 genomes] |
| rs554812 | 1.00[EUR][1000 genomes] |
| rs569741 | 1.00[EUR][1000 genomes] |
| rs575081 | 1.00[EUR][1000 genomes] |
| rs58010797 | 1.00[EUR][1000 genomes] |
| rs58488481 | 1.00[EUR][1000 genomes] |
| rs6591855 | 1.00[EUR][1000 genomes] |
| rs7115265 | 1.00[EUR][1000 genomes] |
| rs7124976 | 1.00[EUR][1000 genomes] |
| rs71579879 | 1.00[EUR][1000 genomes] |
| rs72559736 | 1.00[EUR][1000 genomes] |
| rs73488285 | 1.00[EUR][1000 genomes] |
| rs73488288 | 1.00[EUR][1000 genomes] |
| rs73488297 | 1.00[EUR][1000 genomes] |
| rs73490206 | 1.00[EUR][1000 genomes] |
| rs73490261 | 1.00[EUR][1000 genomes] |
| rs7947416 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832187 | chr11:64121969-64312300 | Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
| 2 | nsv1035485 | chr11:64228847-64354869 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:64245400-64251800 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
| 2 | chr11:64246200-64249600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
