Variant report

Variant	rs17161238
Chromosome Location	chr5:100247554-100247555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:100237355..100239867-chr5:100247037..100249581,2	MCF-7	breast:
2	chr5:100240183..100242753-chr5:100246346..100248554,2	K562	blood:

Variant related genes	Relation type
ENSG00000113532	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs17161227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2548271	1.00[EUR][1000 genomes]
rs2895683	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs57030195	1.00[EUR][1000 genomes]
rs57051501	1.00[EUR][1000 genomes]
rs57093790	1.00[EUR][1000 genomes]
rs57165646	1.00[EUR][1000 genomes]
rs57408442	1.00[EUR][1000 genomes]
rs58460894	1.00[EUR][1000 genomes]
rs58972341	1.00[EUR][1000 genomes]
rs59107693	1.00[EUR][1000 genomes]
rs59522996	1.00[EUR][1000 genomes]
rs61550483	1.00[EUR][1000 genomes]
rs6878351	1.00[EUR][1000 genomes]
rs6878887	1.00[EUR][1000 genomes]
rs6879241	1.00[EUR][1000 genomes]
rs73157721	1.00[EUR][1000 genomes]
rs73157724	1.00[EUR][1000 genomes]
rs73157726	1.00[EUR][1000 genomes]
rs73157755	1.00[EUR][1000 genomes]
rs73157793	1.00[EUR][1000 genomes]
rs73159945	1.00[EUR][1000 genomes]
rs73159969	1.00[EUR][1000 genomes]
rs73159973	1.00[EUR][1000 genomes]
rs73159981	1.00[EUR][1000 genomes]
rs73159982	1.00[EUR][1000 genomes]
rs73159986	1.00[EUR][1000 genomes]
rs73159988	1.00[EUR][1000 genomes]
rs73159991	1.00[EUR][1000 genomes]
rs73160500	1.00[EUR][1000 genomes]
rs73160501	1.00[EUR][1000 genomes]
rs73162260	1.00[EUR][1000 genomes]
rs73162263	1.00[EUR][1000 genomes]
rs73162268	1.00[EUR][1000 genomes]
rs73162273	1.00[EUR][1000 genomes]
rs73162274	1.00[EUR][1000 genomes]
rs73162277	1.00[EUR][1000 genomes]
rs73162285	1.00[EUR][1000 genomes]
rs73162291	1.00[EUR][1000 genomes]
rs73162293	1.00[EUR][1000 genomes]
rs73162294	1.00[EUR][1000 genomes]
rs73162302	1.00[EUR][1000 genomes]
rs73162409	1.00[EUR][1000 genomes]
rs73162427	1.00[EUR][1000 genomes]
rs73162447	1.00[EUR][1000 genomes]
rs73163618	1.00[EUR][1000 genomes]
rs73163629	1.00[EUR][1000 genomes]
rs73163634	1.00[EUR][1000 genomes]
rs73163646	1.00[EUR][1000 genomes]
rs73163652	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	esv1834675	chr5:100143084-100535029	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv882471	chr5:100234439-100362071	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv882472	chr5:100234439-100512338	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv462320	chr5:100247554-100775607	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv599176	chr5:100247554-100775607	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100246200-100252200	Weak transcription	Dnd41	blood

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