Variant report

Variant	rs73159945
Chromosome Location	chr5:100167621-100167622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11958370	1.00[EUR][1000 genomes]
rs17161227	1.00[EUR][1000 genomes]
rs17161238	1.00[EUR][1000 genomes]
rs2548271	1.00[EUR][1000 genomes]
rs28704689	1.00[EUR][1000 genomes]
rs56789558	1.00[EUR][1000 genomes]
rs57030195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57051501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57093790	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57165646	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57408442	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58460894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58571109	1.00[EUR][1000 genomes]
rs58972341	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59107693	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59522996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61509083	1.00[EUR][1000 genomes]
rs61550483	1.00[EUR][1000 genomes]
rs6878351	1.00[EUR][1000 genomes]
rs6878887	1.00[EUR][1000 genomes]
rs6879241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155148	1.00[EUR][1000 genomes]
rs73155161	1.00[EUR][1000 genomes]
rs73155163	1.00[EUR][1000 genomes]
rs73155169	1.00[EUR][1000 genomes]
rs73155170	1.00[EUR][1000 genomes]
rs73157721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159969	1.00[EUR][1000 genomes]
rs73159973	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73159981	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159982	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159988	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160414	1.00[EUR][1000 genomes]
rs73160421	1.00[EUR][1000 genomes]
rs73160425	1.00[EUR][1000 genomes]
rs73160500	1.00[EUR][1000 genomes]
rs73160501	1.00[EUR][1000 genomes]
rs73162260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162285	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162302	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162409	1.00[EUR][1000 genomes]
rs73162427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73163618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73163629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73163634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73163646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73163652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73167380	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021183	chr5:99625857-100221426	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv1834675	chr5:100143084-100535029	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv980989	chr5:100167328-100171481	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100147600-100218000	Weak transcription	Thymus	Thymus
2	chr5:100147800-100179000	Weak transcription	Fetal Thymus	thymus
3	chr5:100148600-100173200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr5:100159800-100170800	Strong transcription	Dnd41	blood
5	chr5:100164000-100173800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr5:100164200-100171800	Weak transcription	Fetal Stomach	stomach
7	chr5:100164200-100174800	Weak transcription	Placenta	Placenta
8	chr5:100164200-100176200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr5:100164400-100170200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:100164400-100173600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr5:100164400-100175000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr5:100164400-100175800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr5:100164600-100168400	Weak transcription	Primary B cells from cord blood	blood
14	chr5:100164600-100174800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr5:100164600-100175000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr5:100164800-100168000	Weak transcription	Small Intestine	intestine
17	chr5:100164800-100169400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr5:100164800-100170200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr5:100164800-100170400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:100165000-100168200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr5:100165000-100168200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:100165000-100168400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr5:100165000-100168400	Weak transcription	NHEK	skin
24	chr5:100165000-100168600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr5:100165000-100168600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr5:100165000-100173600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr5:100165000-100173600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr5:100165000-100174800	Weak transcription	Primary T cells from cord blood	blood
29	chr5:100165000-100175800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr5:100165000-100176200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr5:100165000-100176800	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr5:100165200-100168200	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr5:100165200-100168400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr5:100165600-100174200	ZNF genes & repeats	GM12878-XiMat	blood
35	chr5:100166400-100170400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr5:100167200-100168600	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr5:100167400-100168200	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links