Variant report

Variant	rs73162268
Chromosome Location	chr5:100223293-100223294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:100211489..100213551-chr5:100221467..100224347,2	K562	blood:
2	chr5:100163874..100166036-chr5:100222843..100225362,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs17161227	1.00[EUR][1000 genomes]
rs17161238	1.00[EUR][1000 genomes]
rs2548271	1.00[EUR][1000 genomes]
rs57030195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57051501	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57093790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57165646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57408442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58460894	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58972341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59107693	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59522996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61550483	1.00[EUR][1000 genomes]
rs6878351	1.00[EUR][1000 genomes]
rs6878887	1.00[EUR][1000 genomes]
rs6879241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157724	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159969	1.00[EUR][1000 genomes]
rs73159973	1.00[EUR][1000 genomes]
rs73159981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160414	1.00[EUR][1000 genomes]
rs73160421	1.00[EUR][1000 genomes]
rs73160425	1.00[EUR][1000 genomes]
rs73160500	1.00[EUR][1000 genomes]
rs73160501	1.00[EUR][1000 genomes]
rs73162260	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162263	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162293	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162409	1.00[EUR][1000 genomes]
rs73162427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73163618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73163629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73163634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73163646	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73163652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73167380	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	esv1834675	chr5:100143084-100535029	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100191200-100224400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr5:100191200-100225200	Weak transcription	Fetal Lung	lung
3	chr5:100200200-100234400	Weak transcription	Fetal Brain Male	brain
4	chr5:100207600-100225000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr5:100208000-100235800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:100208800-100223600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr5:100209600-100225600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:100210400-100223800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr5:100213200-100223400	Strong transcription	Primary B cells from peripheral blood	blood
10	chr5:100213800-100223600	Weak transcription	Spleen	Spleen
11	chr5:100214000-100224400	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr5:100215400-100224000	Weak transcription	Colonic Mucosa	Colon
13	chr5:100217000-100225000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr5:100217400-100224400	ZNF genes & repeats	GM12878-XiMat	blood
15	chr5:100218800-100223800	Weak transcription	Fetal Brain Female	brain
16	chr5:100218800-100224200	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr5:100218800-100225000	Weak transcription	Adipose Nuclei	Adipose
18	chr5:100218800-100225800	Weak transcription	Placenta	Placenta
19	chr5:100219000-100233400	Weak transcription	Brain Germinal Matrix	brain
20	chr5:100219200-100226200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:100219600-100225000	Weak transcription	Thymus	Thymus
22	chr5:100220200-100224600	Genic enhancers	Dnd41	blood
23	chr5:100220400-100224600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr5:100220600-100224000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr5:100220800-100223600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr5:100220800-100224200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr5:100220800-100224800	Weak transcription	Primary hematopoietic stem cells	blood
28	chr5:100220800-100225400	Weak transcription	HUVEC	blood vessel
29	chr5:100221800-100225000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr5:100222200-100229600	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr5:100222400-100223400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr5:100222400-100223600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr5:100222400-100225000	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr5:100222400-100226000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr5:100222400-100228000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr5:100222600-100225000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr5:100222800-100225000	Enhancers	Primary B cells from cord blood	blood
38	chr5:100222800-100225000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr5:100223000-100224800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr5:100223000-100225000	Enhancers	Primary T cells from cord blood	blood
41	chr5:100223000-100225000	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr5:100223000-100225000	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr5:100223200-100224600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr5:100223200-100229600	Weak transcription	Fetal Thymus	thymus

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