Variant report

Variant	rs73160425
Chromosome Location	chr5:100027842-100027843
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11958370	1.00[EUR][1000 genomes]
rs2548271	1.00[EUR][1000 genomes]
rs28704689	1.00[EUR][1000 genomes]
rs56789558	1.00[EUR][1000 genomes]
rs57051501	1.00[EUR][1000 genomes]
rs57093790	1.00[EUR][1000 genomes]
rs57408442	1.00[EUR][1000 genomes]
rs57557903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58571109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58972341	1.00[EUR][1000 genomes]
rs59107693	1.00[EUR][1000 genomes]
rs59522996	1.00[EUR][1000 genomes]
rs61509083	1.00[EUR][1000 genomes]
rs61550483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6878351	1.00[EUR][1000 genomes]
rs6878887	1.00[EUR][1000 genomes]
rs6879241	1.00[EUR][1000 genomes]
rs73155148	1.00[EUR][1000 genomes]
rs73155161	1.00[EUR][1000 genomes]
rs73155163	1.00[EUR][1000 genomes]
rs73155169	1.00[EUR][1000 genomes]
rs73155170	1.00[EUR][1000 genomes]
rs73159945	1.00[EUR][1000 genomes]
rs73159969	1.00[EUR][1000 genomes]
rs73159973	1.00[EUR][1000 genomes]
rs73159981	1.00[EUR][1000 genomes]
rs73159982	1.00[EUR][1000 genomes]
rs73159986	1.00[EUR][1000 genomes]
rs73159988	1.00[EUR][1000 genomes]
rs73159991	1.00[EUR][1000 genomes]
rs73160414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162260	1.00[EUR][1000 genomes]
rs73162263	1.00[EUR][1000 genomes]
rs73162268	1.00[EUR][1000 genomes]
rs73162273	1.00[EUR][1000 genomes]
rs73162274	1.00[EUR][1000 genomes]
rs73162277	1.00[EUR][1000 genomes]
rs73162285	1.00[EUR][1000 genomes]
rs73162291	1.00[EUR][1000 genomes]
rs73162293	1.00[EUR][1000 genomes]
rs73162294	1.00[EUR][1000 genomes]
rs73162409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162427	1.00[EUR][1000 genomes]
rs73162447	1.00[EUR][1000 genomes]
rs73163618	1.00[EUR][1000 genomes]
rs73163629	1.00[EUR][1000 genomes]
rs73163634	1.00[EUR][1000 genomes]
rs73163646	1.00[EUR][1000 genomes]
rs73163652	1.00[EUR][1000 genomes]
rs73164236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73164249	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73164272	1.00[AMR][1000 genomes]
rs73164285	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73164288	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73164296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599165	chr5:99469004-100063039	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv948969	chr5:99534096-100133827	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1021183	chr5:99625857-100221426	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv882462	chr5:99745767-100060150	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv1017420	chr5:99745775-100133140	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv537825	chr5:99745775-100133140	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
8	nsv882466	chr5:99936090-100029620	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv882467	chr5:99952282-100100157	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv882468	chr5:99959205-100029620	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv882469	chr5:100018392-100082355	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv882470	chr5:100018392-100100157	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100025600-100028200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:100025600-100028200	Enhancers	Osteobl	bone
3	chr5:100026400-100028200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:100026600-100028200	Enhancers	Hela-S3	cervix
5	chr5:100026800-100028000	Enhancers	NH-A	brain
6	chr5:100027000-100028000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr5:100027000-100028200	Enhancers	NHEK	skin
8	chr5:100027400-100028200	Enhancers	Fetal Kidney	kidney
9	chr5:100027400-100029400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links