Variant report

Variant	rs73163634
Chromosome Location	chr5:100144833-100144834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:100139903..100141553-chr5:100144664..100147138,2	K562	blood:
2	chr5:100144085..100145969-chr5:100148145..100150652,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11958370	1.00[EUR][1000 genomes]
rs17161227	1.00[EUR][1000 genomes]
rs17161238	1.00[EUR][1000 genomes]
rs2548271	1.00[EUR][1000 genomes]
rs28704689	1.00[EUR][1000 genomes]
rs56789558	1.00[EUR][1000 genomes]
rs57030195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57051501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57093790	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57165646	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57408442	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58460894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58571109	1.00[EUR][1000 genomes]
rs58972341	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59107693	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59522996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61509083	1.00[EUR][1000 genomes]
rs61550483	1.00[EUR][1000 genomes]
rs6878351	1.00[EUR][1000 genomes]
rs6878887	1.00[EUR][1000 genomes]
rs6879241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155148	1.00[EUR][1000 genomes]
rs73155161	1.00[EUR][1000 genomes]
rs73155163	1.00[EUR][1000 genomes]
rs73155169	1.00[EUR][1000 genomes]
rs73155170	1.00[EUR][1000 genomes]
rs73157721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159969	1.00[EUR][1000 genomes]
rs73159973	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73159981	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159982	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159988	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160414	1.00[EUR][1000 genomes]
rs73160421	1.00[EUR][1000 genomes]
rs73160425	1.00[EUR][1000 genomes]
rs73160500	1.00[EUR][1000 genomes]
rs73160501	1.00[EUR][1000 genomes]
rs73162260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162285	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162302	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162409	1.00[EUR][1000 genomes]
rs73162427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73163618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73163629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73163646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73163652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73167380	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021183	chr5:99625857-100221426	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv1834675	chr5:100143084-100535029	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100139000-100146400	Weak transcription	Primary B cells from cord blood	blood
2	chr5:100139400-100154400	Weak transcription	Fetal Lung	lung
3	chr5:100139400-100155400	Weak transcription	Placenta	Placenta
4	chr5:100139600-100149200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:100140200-100147000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:100140800-100147200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr5:100141800-100147000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr5:100142200-100147000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:100142400-100146400	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr5:100142400-100150000	Strong transcription	Dnd41	blood
11	chr5:100142400-100154000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:100142600-100147000	Weak transcription	Primary T cells from cord blood	blood
13	chr5:100142600-100150000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr5:100143000-100146400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr5:100143000-100146600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr5:100143000-100146800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:100143000-100147000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr5:100143000-100150000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr5:100143200-100146400	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr5:100143400-100146800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr5:100143400-100163200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr5:100143800-100145600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:100143800-100147000	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr5:100144400-100148000	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr5:100144600-100147000	Weak transcription	Thymus	Thymus
26	chr5:100144600-100147400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr5:100144800-100145600	Weak transcription	Fetal Thymus	thymus
28	chr5:100144800-100146000	Weak transcription	GM12878-XiMat	blood
29	chr5:100144800-100146400	Weak transcription	Primary B cells from peripheral blood	blood

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