Variant report

Variant	rs73167380
Chromosome Location	chr5:100380409-100380410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:100378423..100383461-chr5:100383840..100387149,4	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs57030195	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57093790	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57165646	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57408442	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58460894	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59522996	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157721	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157724	1.00[AMR][1000 genomes]
rs73157726	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157755	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157793	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73159945	1.00[AMR][1000 genomes]
rs73159981	1.00[AMR][1000 genomes]
rs73159982	1.00[AMR][1000 genomes]
rs73159986	1.00[AMR][1000 genomes]
rs73159988	1.00[AMR][1000 genomes]
rs73159991	1.00[AMR][1000 genomes]
rs73162260	1.00[AMR][1000 genomes]
rs73162263	1.00[AMR][1000 genomes]
rs73162268	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73162273	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73162274	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73162277	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73162285	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73162291	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73162293	1.00[AMR][1000 genomes]
rs73162294	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73162302	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73163634	1.00[AMR][1000 genomes]
rs73163646	1.00[AMR][1000 genomes]
rs73163652	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	esv1834675	chr5:100143084-100535029	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv882472	chr5:100234439-100512338	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv462320	chr5:100247554-100775607	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv599176	chr5:100247554-100775607	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv882473	chr5:100263707-100532885	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv882474	chr5:100263707-100537863	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv882475	chr5:100275313-100390864	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv882476	chr5:100275313-100404802	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1023318	chr5:100287947-100492390	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv482721	chr5:100301179-100439072	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1029468	chr5:100344254-100513327	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv882477	chr5:100362071-100577695	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100380200-100380800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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