Variant report

Variant	rs73163652
Chromosome Location	chr5:100151529-100151530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:100149835..100151666-chr5:100153497..100156405,2	MCF-7	breast:
2	chr5:100150270..100152033-chr5:100157955..100159710,2	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11958370	1.00[EUR][1000 genomes]
rs17161227	1.00[EUR][1000 genomes]
rs17161238	1.00[EUR][1000 genomes]
rs2548271	1.00[EUR][1000 genomes]
rs28704689	1.00[EUR][1000 genomes]
rs56789558	1.00[EUR][1000 genomes]
rs57030195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57051501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57093790	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57165646	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57408442	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58460894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58571109	1.00[EUR][1000 genomes]
rs58972341	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59107693	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59522996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61509083	1.00[EUR][1000 genomes]
rs61550483	1.00[EUR][1000 genomes]
rs6878351	1.00[EUR][1000 genomes]
rs6878887	1.00[EUR][1000 genomes]
rs6879241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155148	1.00[EUR][1000 genomes]
rs73155161	1.00[EUR][1000 genomes]
rs73155163	1.00[EUR][1000 genomes]
rs73155169	1.00[EUR][1000 genomes]
rs73155170	1.00[EUR][1000 genomes]
rs73157721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159969	1.00[EUR][1000 genomes]
rs73159973	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73159981	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159982	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159988	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160414	1.00[EUR][1000 genomes]
rs73160421	1.00[EUR][1000 genomes]
rs73160425	1.00[EUR][1000 genomes]
rs73160500	1.00[EUR][1000 genomes]
rs73160501	1.00[EUR][1000 genomes]
rs73162260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162285	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162302	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162409	1.00[EUR][1000 genomes]
rs73162427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73163618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73163629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73163634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73163646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73167380	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021183	chr5:99625857-100221426	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv1834675	chr5:100143084-100535029	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100139400-100154400	Weak transcription	Fetal Lung	lung
2	chr5:100139400-100155400	Weak transcription	Placenta	Placenta
3	chr5:100142400-100154000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:100143400-100163200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr5:100145800-100164000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr5:100147600-100162000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr5:100147600-100163200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr5:100147600-100218000	Weak transcription	Thymus	Thymus
9	chr5:100147800-100153400	Weak transcription	Primary B cells from peripheral blood	blood
10	chr5:100147800-100154200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:100147800-100154800	Weak transcription	Primary B cells from cord blood	blood
12	chr5:100147800-100161600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr5:100147800-100161600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr5:100147800-100161800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr5:100147800-100163000	Weak transcription	Primary T cells from cord blood	blood
16	chr5:100147800-100163200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr5:100147800-100163800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr5:100147800-100163800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr5:100147800-100179000	Weak transcription	Fetal Thymus	thymus
20	chr5:100148000-100151600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:100148000-100152400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr5:100148200-100161800	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr5:100148200-100163200	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr5:100148600-100152000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr5:100148600-100154200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:100148600-100173200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr5:100150000-100153400	Weak transcription	Dnd41	blood
28	chr5:100150000-100160400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr5:100150400-100161200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr5:100150400-100163400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr5:100151400-100152000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr5:100151400-100152600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links