Variant report

Variant	rs11958370
Chromosome Location	chr5:100002650-100002651
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:99993129..99995264-chr5:100001992..100004177,2	K562	blood:

Variant related genes	Relation type
ENSG00000250806	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11953932	0.83[AMR][1000 genomes]
rs11960094	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2548271	1.00[EUR][1000 genomes]
rs28704689	1.00[EUR][1000 genomes]
rs56789558	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57051501	1.00[EUR][1000 genomes]
rs57557903	1.00[EUR][1000 genomes]
rs58571109	1.00[EUR][1000 genomes]
rs58972341	1.00[EUR][1000 genomes]
rs59107693	1.00[EUR][1000 genomes]
rs60124656	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61509083	1.00[EUR][1000 genomes]
rs61550483	1.00[EUR][1000 genomes]
rs6878351	1.00[EUR][1000 genomes]
rs6878887	1.00[EUR][1000 genomes]
rs6879241	1.00[EUR][1000 genomes]
rs73155148	1.00[EUR][1000 genomes]
rs73155161	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155163	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155169	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155170	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159945	1.00[EUR][1000 genomes]
rs73159969	1.00[EUR][1000 genomes]
rs73159973	1.00[EUR][1000 genomes]
rs73159981	1.00[EUR][1000 genomes]
rs73159982	1.00[EUR][1000 genomes]
rs73159986	1.00[EUR][1000 genomes]
rs73159988	1.00[EUR][1000 genomes]
rs73159991	1.00[EUR][1000 genomes]
rs73160414	1.00[EUR][1000 genomes]
rs73160421	1.00[EUR][1000 genomes]
rs73160425	1.00[EUR][1000 genomes]
rs73160500	1.00[EUR][1000 genomes]
rs73160501	1.00[EUR][1000 genomes]
rs73162409	1.00[EUR][1000 genomes]
rs73162427	1.00[EUR][1000 genomes]
rs73162447	1.00[EUR][1000 genomes]
rs73163618	1.00[EUR][1000 genomes]
rs73163629	1.00[EUR][1000 genomes]
rs73163634	1.00[EUR][1000 genomes]
rs73163646	1.00[EUR][1000 genomes]
rs73163652	1.00[EUR][1000 genomes]
rs73164236	1.00[EUR][1000 genomes]
rs73164249	1.00[EUR][1000 genomes]
rs73164285	1.00[EUR][1000 genomes]
rs73164288	1.00[EUR][1000 genomes]
rs73164296	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599165	chr5:99469004-100063039	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv948969	chr5:99534096-100133827	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1021183	chr5:99625857-100221426	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv882462	chr5:99745767-100060150	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv1017420	chr5:99745775-100133140	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv537825	chr5:99745775-100133140	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv1018395	chr5:99827242-100003207	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
9	nsv882466	chr5:99936090-100029620	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv882467	chr5:99952282-100100157	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv599174	chr5:99959205-100006633	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv882468	chr5:99959205-100029620	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1019974	chr5:99968378-100010033	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:99999800-100004600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr5:100000200-100004200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:100001800-100003800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:100001800-100004000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr5:100001800-100004000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:100002000-100004600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr5:100002200-100003000	Enhancers	Primary B cells from cord blood	blood
8	chr5:100002200-100004000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr5:100002400-100003000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:100002400-100003200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr5:100002400-100003600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:100002400-100004000	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr5:100002400-100004000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr5:100002400-100004800	Enhancers	HUVEC	blood vessel
15	chr5:100002600-100003000	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr5:100002600-100003200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:100002600-100003200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:100002600-100004600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr5:100002600-100005000	Enhancers	HMEC	breast

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