Variant report

Variant	rs17161596
Chromosome Location	chr7:98760009-98760010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98744404..98747208-chr7:98758596..98760579,2	MCF-7	breast:
2	chr7:98749796..98751324-chr7:98758015..98760030,2	MCF-7	breast:
3	chr7:98758613..98761078-chr7:98822183..98824776,3	MCF-7	breast:
4	chr7:98758729..98762342-chr7:98808089..98809747,3	MCF-7	breast:
5	chr7:98738735..98743436-chr7:98753010..98762849,21	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198742	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2008424	1.00[AMR][1000 genomes]
rs41417549	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60470212	1.00[AMR][1000 genomes]
rs60686896	1.00[AMR][1000 genomes]
rs61099450	1.00[AMR][1000 genomes]
rs61147937	1.00[AMR][1000 genomes]
rs61239848	1.00[AMR][1000 genomes]
rs61742315	1.00[AMR][1000 genomes]
rs6942400	1.00[AMR][1000 genomes]
rs73401318	1.00[AMR][1000 genomes]
rs73401319	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73401334	1.00[AMR][1000 genomes]
rs73403115	1.00[AMR][1000 genomes]
rs73403124	1.00[AMR][1000 genomes]
rs73405119	1.00[AMR][1000 genomes]
rs73407298	1.00[AMR][1000 genomes]
rs73407301	1.00[AMR][1000 genomes]
rs7806536	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv2755119	chr7:98721885-98800145	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
4	nsv464645	chr7:98755272-98788589	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv464646	chr7:98755272-98788589	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv607925	chr7:98755272-98788589	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv528070	chr7:98759117-98766930	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98759400-98760600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:98759400-98760800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:98759400-98760800	Enhancers	NHEK	skin
4	chr7:98759800-98760600	Enhancers	Hela-S3	cervix
5	chr7:98759800-98760800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:98759800-98760800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:98759800-98760800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:98759800-98760800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr7:98760000-98760200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr7:98760000-98760200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:98760000-98760200	Flanking Active TSS	HepG2	liver
12	chr7:98760000-98760400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:98760000-98760400	Flanking Active TSS	A549	lung
14	chr7:98760000-98760600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:98760000-98760600	Enhancers	Brain Substantia Nigra	brain
16	chr7:98760000-98760600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr7:98760000-98760600	Enhancers	NH-A	brain
18	chr7:98760000-98760600	Enhancers	Osteobl	bone
19	chr7:98760000-98760800	Enhancers	H1 Cell Line	embryonic stem cell
20	chr7:98760000-98760800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr7:98760000-98760800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr7:98760000-98760800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr7:98760000-98760800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:98760000-98760800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr7:98760000-98760800	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr7:98760000-98760800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr7:98760000-98760800	Enhancers	Pancreas	Pancrea
28	chr7:98760000-98761600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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