Variant report

Variant	rs61147937
Chromosome Location	chr7:98920937-98920938
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:98920329-98921129	K562	blood:	n/a	n/a
2	POLR2A	chr7:98920738-98920975	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:98739456..98741292-chr7:98918688..98921036,2	MCF-7	breast:
2	chr7:98915217..98917210-chr7:98919923..98922724,2	K562	blood:
3	chr7:98852104..98853933-chr7:98919430..98921281,2	MCF-7	breast:

Variant related genes	Relation type
ARPC1A	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11984190	1.00[AMR][1000 genomes]
rs17161596	1.00[AMR][1000 genomes]
rs2008424	1.00[AMR][1000 genomes]
rs41417549	1.00[AMR][1000 genomes]
rs60470212	1.00[AMR][1000 genomes]
rs60686896	1.00[AMR][1000 genomes]
rs61099450	1.00[AMR][1000 genomes]
rs61239848	1.00[AMR][1000 genomes]
rs61742315	1.00[AMR][1000 genomes]
rs6942400	1.00[AMR][1000 genomes]
rs73401318	1.00[AMR][1000 genomes]
rs73401319	1.00[AMR][1000 genomes]
rs73401334	1.00[AMR][1000 genomes]
rs73403115	1.00[AMR][1000 genomes]
rs73403124	1.00[AMR][1000 genomes]
rs73405119	1.00[AMR][1000 genomes]
rs73407298	1.00[AMR][1000 genomes]
rs73407301	1.00[AMR][1000 genomes]
rs7806536	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98908200-98922600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:98908400-98921800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:98908400-98923000	Weak transcription	Aorta	Aorta
4	chr7:98910200-98921800	Weak transcription	Right Ventricle	heart
5	chr7:98910600-98922600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:98911000-98922400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:98911000-98922400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:98911000-98922600	Weak transcription	NHLF	lung
9	chr7:98911200-98922600	Weak transcription	Brain Substantia Nigra	brain
10	chr7:98911400-98922600	Weak transcription	A549	lung
11	chr7:98912200-98921800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:98912600-98921800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr7:98912600-98922200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:98915000-98922600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:98918600-98921800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr7:98918600-98922200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:98918600-98922400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:98918600-98922400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:98918600-98922400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr7:98918600-98922400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr7:98918600-98922600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr7:98918800-98922400	Weak transcription	Fetal Intestine Small	intestine
23	chr7:98919000-98922400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr7:98919400-98922600	Weak transcription	Stomach Mucosa	stomach
25	chr7:98920000-98922600	Weak transcription	Fetal Heart	heart
26	chr7:98920000-98922600	Weak transcription	HUVEC	blood vessel
27	chr7:98920400-98922800	Weak transcription	Left Ventricle	heart
28	chr7:98920600-98922600	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links